miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 151733 0.74 0.140423
Target:  5'- gGCCGcGCGcGACCCCCGGGGG-GUgUGu -3'
miRNA:   3'- gUGGC-CGC-CUGGGGGCCUCCgCGgAC- -5'
5569 3' -66.8 NC_001806.1 + 151537 0.68 0.346533
Target:  5'- gCGCCcGUGGGCCCgggcggCCGGGGGCGgCg- -3'
miRNA:   3'- -GUGGcCGCCUGGG------GGCCUCCGCgGac -5'
5569 3' -66.8 NC_001806.1 + 150258 0.66 0.465779
Target:  5'- cCugCGuCGGugCCCCGGGGcuuccCGCCUu -3'
miRNA:   3'- -GugGCcGCCugGGGGCCUCc----GCGGAc -5'
5569 3' -66.8 NC_001806.1 + 147778 0.67 0.376123
Target:  5'- gACgCGGgGGGCCCggggCgGGGGGCggaGCCUGg -3'
miRNA:   3'- gUG-GCCgCCUGGG----GgCCUCCG---CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 147688 0.7 0.234472
Target:  5'- gGCCggggcgcgggGGCGGGCC-CCGGAGGCGgCg- -3'
miRNA:   3'- gUGG----------CCGCCUGGgGGCCUCCGCgGac -5'
5569 3' -66.8 NC_001806.1 + 147211 0.66 0.423595
Target:  5'- -cCCGGCGGcggaagaggcgGCCCCCgcGGGGGUcgggGCCg- -3'
miRNA:   3'- guGGCCGCC-----------UGGGGG--CCUCCG----CGGac -5'
5569 3' -66.8 NC_001806.1 + 144986 0.69 0.311945
Target:  5'- -cCCGGCGGACCCaaGG-GGCcCCg- -3'
miRNA:   3'- guGGCCGCCUGGGggCCuCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 144864 0.7 0.258715
Target:  5'- uCGCCGGCacgcgacgcgaaaaaGGcCCCCCGGAGGCuuuuCCg- -3'
miRNA:   3'- -GUGGCCG---------------CCuGGGGGCCUCCGc---GGac -5'
5569 3' -66.8 NC_001806.1 + 138732 0.66 0.459741
Target:  5'- --aCGGCGGagauucugucucugcGCCCCaaaucuuCGGGGGUGCCg- -3'
miRNA:   3'- gugGCCGCC---------------UGGGG-------GCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 132935 0.74 0.143821
Target:  5'- gGCUGGCGGACCCCCacggccGGAcGG-GCCUa -3'
miRNA:   3'- gUGGCCGCCUGGGGG------CCU-CCgCGGAc -5'
5569 3' -66.8 NC_001806.1 + 127749 0.66 0.457165
Target:  5'- -cCCgGGCGGGCUgCCGGGuGcGgGCCUGu -3'
miRNA:   3'- guGG-CCGCCUGGgGGCCU-C-CgCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 127265 1.06 0.000615
Target:  5'- uCACCGGCGGACCCCCGGAGGCGCCUGc -3'
miRNA:   3'- -GUGGCCGCCUGGGGGCCUCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 127199 0.66 0.465779
Target:  5'- gCGCgGgguuacGCGGGCCCCgGGGagacaGCGCCUGc -3'
miRNA:   3'- -GUGgC------CGCCUGGGGgCCUc----CGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 126421 0.67 0.368568
Target:  5'- aCACCGGU----CCCCGGAGGCGUUc- -3'
miRNA:   3'- -GUGGCCGccugGGGGCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 125842 0.71 0.212653
Target:  5'- gCGCC-GCGGGCCCCCGGccgccgcggacgccGuGGCGCCc- -3'
miRNA:   3'- -GUGGcCGCCUGGGGGCC--------------U-CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 125807 0.66 0.423595
Target:  5'- gACC-GCGGACUCggUCGGcaccuauGGCGCCUGa -3'
miRNA:   3'- gUGGcCGCCUGGG--GGCCu------CCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 122338 0.66 0.465779
Target:  5'- gCGCCGGgGGACgagaaaCaCGGuGGCGCgCUGg -3'
miRNA:   3'- -GUGGCCgCCUGgg----G-GCCuCCGCG-GAC- -5'
5569 3' -66.8 NC_001806.1 + 121826 0.66 0.440198
Target:  5'- uGCgGcGCGGAcaacauCCCCCcgaccagcgccgGGuGGCGCCUGu -3'
miRNA:   3'- gUGgC-CGCCU------GGGGG------------CCuCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 121290 0.66 0.440198
Target:  5'- aUACgGGCGGccaccCCCCCGGAGGaaaCCc- -3'
miRNA:   3'- -GUGgCCGCCu----GGGGGCCUCCgc-GGac -5'
5569 3' -66.8 NC_001806.1 + 120862 0.73 0.161966
Target:  5'- -cCCGGCGG-CCCCUGGcGcCGCCUGg -3'
miRNA:   3'- guGGCCGCCuGGGGGCCuCcGCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.