miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 65649 0.69 0.286208
Target:  5'- -cCCGGCGGccucCCCCUGGGuGGCuGCgCUGg -3'
miRNA:   3'- guGGCCGCCu---GGGGGCCU-CCG-CG-GAC- -5'
5569 3' -66.8 NC_001806.1 + 3354 0.69 0.290589
Target:  5'- gGCUGGCGGGCcgggccccggccagCCCCGGGacGGcCGCCa- -3'
miRNA:   3'- gUGGCCGCCUG--------------GGGGCCU--CC-GCGGac -5'
5569 3' -66.8 NC_001806.1 + 24928 0.69 0.292482
Target:  5'- --gCGGCGGGaaguuguggaCUgGGAGGCGCCUGg -3'
miRNA:   3'- gugGCCGCCUgg--------GGgCCUCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 28272 0.69 0.292482
Target:  5'- aACCGGCcgccauguugggGGACCCCCacucauacacgGGAgccgGGCGCCa- -3'
miRNA:   3'- gUGGCCG------------CCUGGGGG-----------CCU----CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 77124 0.69 0.295021
Target:  5'- gCGCCGaGCGGGCCggggccguggaggagCUCgGGGGGCGCgUGg -3'
miRNA:   3'- -GUGGC-CGCCUGG---------------GGG-CCUCCGCGgAC- -5'
5569 3' -66.8 NC_001806.1 + 89282 0.69 0.298862
Target:  5'- gGCCGGCGGGCgcaaaaaaCCCGGAcGcCGcCCUGg -3'
miRNA:   3'- gUGGCCGCCUGg-------GGGCCUcC-GC-GGAC- -5'
5569 3' -66.8 NC_001806.1 + 103515 0.69 0.301444
Target:  5'- cCGCCGGauccaaaugagucuuCGGACCUCgCGGGGGcCGCUUa -3'
miRNA:   3'- -GUGGCC---------------GCCUGGGG-GCCUCC-GCGGAc -5'
5569 3' -66.8 NC_001806.1 + 26389 0.69 0.303392
Target:  5'- cCGCCGccaucGCGGcccccgccGCCCCCGGccgcccgggcccacGGGCGCCg- -3'
miRNA:   3'- -GUGGC-----CGCC--------UGGGGGCC--------------UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 13753 0.69 0.30535
Target:  5'- uUugCuGCGGACCCCaUGGAGGC-CCa- -3'
miRNA:   3'- -GugGcCGCCUGGGG-GCCUCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 21194 0.69 0.30535
Target:  5'- gAgCGGgGGGCCCUCGGgugGGGCGCg-- -3'
miRNA:   3'- gUgGCCgCCUGGGGGCC---UCCGCGgac -5'
5569 3' -66.8 NC_001806.1 + 22060 0.69 0.307975
Target:  5'- -cCCGGCgccGGGCCCCCGcccccGGGGCgggugcuguacggcgGCCUGg -3'
miRNA:   3'- guGGCCG---CCUGGGGGC-----CUCCG---------------CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 26529 0.69 0.311945
Target:  5'- cCGCCGGUGGGCCCCCGccuucuuGuucgcugcugcuGCGCCa- -3'
miRNA:   3'- -GUGGCCGCCUGGGGGCcu-----C------------CGCGGac -5'
5569 3' -66.8 NC_001806.1 + 33814 0.69 0.311945
Target:  5'- gGCgGGUGGACUCgCGGGGG-GCCg- -3'
miRNA:   3'- gUGgCCGCCUGGGgGCCUCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 144986 0.69 0.311945
Target:  5'- -cCCGGCGGACCCaaGG-GGCcCCg- -3'
miRNA:   3'- guGGCCGCCUGGGggCCuCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 2818 0.68 0.318648
Target:  5'- ---gGGCGGGCucgggCCCCGGGGGCGUg-- -3'
miRNA:   3'- guggCCGCCUG-----GGGGCCUCCGCGgac -5'
5569 3' -66.8 NC_001806.1 + 32534 0.68 0.318648
Target:  5'- aCACCGGCcGACCCCCuGGcGGUcuuccaGCCg- -3'
miRNA:   3'- -GUGGCCGcCUGGGGG-CCuCCG------CGGac -5'
5569 3' -66.8 NC_001806.1 + 22825 0.68 0.325458
Target:  5'- uGCC-GCGGGaUCCUGGAGGCGCUg- -3'
miRNA:   3'- gUGGcCGCCUgGGGGCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 4432 0.68 0.325458
Target:  5'- gGCCcgGGCGGGggcggcguCCgCCCGGGGGCuGCCg- -3'
miRNA:   3'- gUGG--CCGCCU--------GG-GGGCCUCCG-CGGac -5'
5569 3' -66.8 NC_001806.1 + 22633 0.68 0.332376
Target:  5'- gCACCGggcgagcgcGCGGuGCCCgCCGGGuacGGCGCCg- -3'
miRNA:   3'- -GUGGC---------CGCC-UGGG-GGCCU---CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 78671 0.68 0.332376
Target:  5'- uGCUGGCGGcaguGCUCCUGGGcGCGCCc- -3'
miRNA:   3'- gUGGCCGCC----UGGGGGCCUcCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.