miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 23547 0.74 0.131928
Target:  5'- gGCUGGCGGcggcaGCCCCCGGGgcccagccacacggcGGCGCCc- -3'
miRNA:   3'- gUGGCCGCC-----UGGGGGCCU---------------CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 86003 0.75 0.121534
Target:  5'- --aCGGCGu-CUCCCGGGGGCGCUUGg -3'
miRNA:   3'- gugGCCGCcuGGGGGCCUCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 52032 0.76 0.102492
Target:  5'- cCGCuCGGCGG-CagCCCGGAGGCGCCc- -3'
miRNA:   3'- -GUG-GCCGCCuGg-GGGCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 47228 0.77 0.076236
Target:  5'- -cCCGGCGGccCCCCCGcuguacgcaacGGGGCGCCUGa -3'
miRNA:   3'- guGGCCGCCu-GGGGGC-----------CUCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 71361 0.78 0.070755
Target:  5'- aCGCCaGGCGGACCgCgaGGGGGCGCCUc -3'
miRNA:   3'- -GUGG-CCGCCUGGgGg-CCUCCGCGGAc -5'
5569 3' -66.8 NC_001806.1 + 21794 0.73 0.158179
Target:  5'- gCGCCGGCaG-CCCCCGGGcGGaCGCCg- -3'
miRNA:   3'- -GUGGCCGcCuGGGGGCCU-CC-GCGGac -5'
5569 3' -66.8 NC_001806.1 + 120862 0.73 0.161966
Target:  5'- -cCCGGCGG-CCCCUGGcGcCGCCUGg -3'
miRNA:   3'- guGGCCGCCuGGGGGCCuCcGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 91893 0.7 0.234472
Target:  5'- gACCaGGCGGuCCCCaCGGccaugGGGCGgCUGg -3'
miRNA:   3'- gUGG-CCGCCuGGGG-GCC-----UCCGCgGAC- -5'
5569 3' -66.8 NC_001806.1 + 102342 0.71 0.229236
Target:  5'- -cCCGGgGGAcguCCCCCGGGGcCGCCg- -3'
miRNA:   3'- guGGCCgCCU---GGGGGCCUCcGCGGac -5'
5569 3' -66.8 NC_001806.1 + 22158 0.71 0.229236
Target:  5'- aCGCCGGUucgaggccucGGGCgCCCCGGcggccguguGGGCGCCc- -3'
miRNA:   3'- -GUGGCCG----------CCUG-GGGGCC---------UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 2680 0.71 0.229236
Target:  5'- cCGCCGuGUGGcugGgCCCCGGGGGCuGCCg- -3'
miRNA:   3'- -GUGGC-CGCC---UgGGGGCCUCCG-CGGac -5'
5569 3' -66.8 NC_001806.1 + 125842 0.71 0.212653
Target:  5'- gCGCC-GCGGGCCCCCGGccgccgcggacgccGuGGCGCCc- -3'
miRNA:   3'- -GUGGcCGCCUGGGGGCC--------------U-CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 27772 0.71 0.209271
Target:  5'- aCACCGGguUGGGCCCCCaaaucGGGGGCcggGCCg- -3'
miRNA:   3'- -GUGGCC--GCCUGGGGG-----CCUCCG---CGGac -5'
5569 3' -66.8 NC_001806.1 + 80321 0.72 0.201714
Target:  5'- aCAUCuGCGcGCCCCCGGGGGCauuugaccgucagccGCCUGu -3'
miRNA:   3'- -GUGGcCGCcUGGGGGCCUCCG---------------CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 2298 0.72 0.199862
Target:  5'- -uCCGGCGGcCCCCCcGAGGCcccGCCg- -3'
miRNA:   3'- guGGCCGCCuGGGGGcCUCCG---CGGac -5'
5569 3' -66.8 NC_001806.1 + 38273 0.72 0.195297
Target:  5'- gACgGGCGGACCgCCGGGcgagcGGCGUCg- -3'
miRNA:   3'- gUGgCCGCCUGGgGGCCU-----CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 27242 0.72 0.190823
Target:  5'- uCACagGGCGGGCCgCCuCGGGGGCGggaCUGg -3'
miRNA:   3'- -GUGg-CCGCCUGG-GG-GCCUCCGCg--GAC- -5'
5569 3' -66.8 NC_001806.1 + 13644 0.72 0.177939
Target:  5'- aCACgCGcCGGACCCCCGGAGG-GUCg- -3'
miRNA:   3'- -GUG-GCcGCCUGGGGGCCUCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 115215 0.72 0.173819
Target:  5'- cCGCCGGCccugcaACCCCCGGGGacGCGCCg- -3'
miRNA:   3'- -GUGGCCGcc----UGGGGGCCUC--CGCGGac -5'
5569 3' -66.8 NC_001806.1 + 119589 0.73 0.169785
Target:  5'- uGCUGGCGGGucuggagcCCCCCGGcGGGgGCCg- -3'
miRNA:   3'- gUGGCCGCCU--------GGGGGCC-UCCgCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.