miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 147778 0.67 0.376123
Target:  5'- gACgCGGgGGGCCCggggCgGGGGGCggaGCCUGg -3'
miRNA:   3'- gUG-GCCgCCUGGG----GgCCUCCG---CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 51227 0.67 0.376123
Target:  5'- gACCGGCGGGuCCCgaCCGaacGGGCGUCa- -3'
miRNA:   3'- gUGGCCGCCU-GGG--GGCc--UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 73993 0.67 0.368568
Target:  5'- gGCCGGgGcGGCCCCgcaGGGGGCuCCg- -3'
miRNA:   3'- gUGGCCgC-CUGGGGg--CCUCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 46104 0.67 0.368568
Target:  5'- -uCCGGCccgGGGCCUgCGcGGGCGCCUc -3'
miRNA:   3'- guGGCCG---CCUGGGgGCcUCCGCGGAc -5'
5569 3' -66.8 NC_001806.1 + 126421 0.67 0.368568
Target:  5'- aCACCGGU----CCCCGGAGGCGUUc- -3'
miRNA:   3'- -GUGGCCGccugGGGGCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 13269 0.67 0.368568
Target:  5'- uGCCGGCGGuCUCaaacgCGGGGGCGUg-- -3'
miRNA:   3'- gUGGCCGCCuGGGg----GCCUCCGCGgac -5'
5569 3' -66.8 NC_001806.1 + 9328 0.67 0.368568
Target:  5'- gACCGacGUGGGgCCUCGGgaugGGGCGCCUu -3'
miRNA:   3'- gUGGC--CGCCUgGGGGCC----UCCGCGGAc -5'
5569 3' -66.8 NC_001806.1 + 4936 0.67 0.376123
Target:  5'- uCGCCGGCgucGGugCCCgccgCGGGGGC-CCUc -3'
miRNA:   3'- -GUGGCCG---CCugGGG----GCCUCCGcGGAc -5'
5569 3' -66.8 NC_001806.1 + 29769 0.67 0.381474
Target:  5'- -cCCGcCGGACgCCCCGcgcccccccacgcaGAGGCGCCg- -3'
miRNA:   3'- guGGCcGCCUG-GGGGC--------------CUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 56859 0.67 0.399409
Target:  5'- gGCCgcGGCGGGCCCaCCGauccaccaGAGcGCGCgCUGc -3'
miRNA:   3'- gUGG--CCGCCUGGG-GGC--------CUC-CGCG-GAC- -5'
5569 3' -66.8 NC_001806.1 + 56811 0.67 0.407372
Target:  5'- -cCUGGCGGuggucGCCCCCGGGccCGCCa- -3'
miRNA:   3'- guGGCCGCC-----UGGGGGCCUccGCGGac -5'
5569 3' -66.8 NC_001806.1 + 26699 0.67 0.391545
Target:  5'- -cCCGGCGuGGgCCCgGGGGGCGgggCUGa -3'
miRNA:   3'- guGGCCGC-CUgGGGgCCUCCGCg--GAC- -5'
5569 3' -66.8 NC_001806.1 + 9506 0.67 0.389206
Target:  5'- cCAUUGGUGGAgggagagucgggucUCUCCGGGGGgGCCa- -3'
miRNA:   3'- -GUGGCCGCCU--------------GGGGGCCUCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 83980 0.67 0.383783
Target:  5'- uCGCCGG-GGACCgcgagCCGGAGGaguCGCCg- -3'
miRNA:   3'- -GUGGCCgCCUGGg----GGCCUCC---GCGGac -5'
5569 3' -66.8 NC_001806.1 + 4346 0.67 0.383783
Target:  5'- -cCCGGCGGcgcucgaugcgGCCCgCGGAGGcCGCg-- -3'
miRNA:   3'- guGGCCGCC-----------UGGGgGCCUCC-GCGgac -5'
5569 3' -66.8 NC_001806.1 + 112328 0.67 0.383012
Target:  5'- ---aGGCGGGCCaccgCCgGGAGGCcgucgagGCCUGg -3'
miRNA:   3'- guggCCGCCUGG----GGgCCUCCG-------CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 78043 0.67 0.366322
Target:  5'- gCGCUGGUGGccaGCuCCCCGGaacAcauuuacaccuuuuGGCGCCUGg -3'
miRNA:   3'- -GUGGCCGCC---UG-GGGGCC---U--------------CCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 2443 0.67 0.399409
Target:  5'- gGCCaaagaGGCGG-CCCCCGGcGGCcCCg- -3'
miRNA:   3'- gUGG-----CCGCCuGGGGGCCuCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 22633 0.68 0.332376
Target:  5'- gCACCGggcgagcgcGCGGuGCCCgCCGGGuacGGCGCCg- -3'
miRNA:   3'- -GUGGC---------CGCC-UGGG-GGCCU---CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 78671 0.68 0.332376
Target:  5'- uGCUGGCGGcaguGCUCCUGGGcGCGCCc- -3'
miRNA:   3'- gUGGCCGCC----UGGGGGCCUcCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.