miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 45372 0.66 0.428537
Target:  5'- aCACUGGCcaaaugucugCCCCGGGGGC-CCUGg -3'
miRNA:   3'- -GUGGCCGccug------GGGGCCUCCGcGGAC- -5'
5569 3' -66.8 NC_001806.1 + 51364 0.66 0.428537
Target:  5'- -uUCGGCGGGugucugcuccccaCCCCGGAGGgGCUc- -3'
miRNA:   3'- guGGCCGCCUg------------GGGGCCUCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 43504 0.66 0.423595
Target:  5'- gGCCguGGCGG-CCCaucaGGAcaagaugcGGCGCCUGg -3'
miRNA:   3'- gUGG--CCGCCuGGGgg--CCU--------CCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 119271 0.66 0.423595
Target:  5'- aGCCcuuGGCccGGCCCCacgCGGGGGCGCCc- -3'
miRNA:   3'- gUGG---CCGc-CUGGGG---GCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 147211 0.66 0.423595
Target:  5'- -cCCGGCGGcggaagaggcgGCCCCCgcGGGGGUcgggGCCg- -3'
miRNA:   3'- guGGCCGCC-----------UGGGGG--CCUCCG----CGGac -5'
5569 3' -66.8 NC_001806.1 + 125807 0.66 0.423595
Target:  5'- gACC-GCGGACUCggUCGGcaccuauGGCGCCUGa -3'
miRNA:   3'- gUGGcCGCCUGGG--GGCCu------CCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 33057 0.66 0.415435
Target:  5'- gGCCGGgaaccCGGaaaaGCCUCCGGGGG-GCCUu -3'
miRNA:   3'- gUGGCC-----GCC----UGGGGGCCUCCgCGGAc -5'
5569 3' -66.8 NC_001806.1 + 3576 0.67 0.407372
Target:  5'- gGgCGGCgaGGAUCCCCGc-GGCGCCg- -3'
miRNA:   3'- gUgGCCG--CCUGGGGGCcuCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 56811 0.67 0.407372
Target:  5'- -cCUGGCGGuggucGCCCCCGGGccCGCCa- -3'
miRNA:   3'- guGGCCGCC-----UGGGGGCCUccGCGGac -5'
5569 3' -66.8 NC_001806.1 + 114347 0.67 0.407372
Target:  5'- uGCuCGGCGGcGCCCgaCGcGGGCGCCa- -3'
miRNA:   3'- gUG-GCCGCC-UGGGg-GCcUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 68677 0.67 0.407372
Target:  5'- aGCCcGCGGACCUCCaucGAGGCcCUUGg -3'
miRNA:   3'- gUGGcCGCCUGGGGGc--CUCCGcGGAC- -5'
5569 3' -66.8 NC_001806.1 + 99826 0.67 0.407372
Target:  5'- cCACCGGCGuGuacAUUCCauaGGGGGCGCUg- -3'
miRNA:   3'- -GUGGCCGC-C---UGGGGg--CCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 2443 0.67 0.399409
Target:  5'- gGCCaaagaGGCGG-CCCCCGGcGGCcCCg- -3'
miRNA:   3'- gUGG-----CCGCCuGGGGGCCuCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 56859 0.67 0.399409
Target:  5'- gGCCgcGGCGGGCCCaCCGauccaccaGAGcGCGCgCUGc -3'
miRNA:   3'- gUGG--CCGCCUGGG-GGC--------CUC-CGCG-GAC- -5'
5569 3' -66.8 NC_001806.1 + 26699 0.67 0.391545
Target:  5'- -cCCGGCGuGGgCCCgGGGGGCGgggCUGa -3'
miRNA:   3'- guGGCCGC-CUgGGGgCCUCCGCg--GAC- -5'
5569 3' -66.8 NC_001806.1 + 9506 0.67 0.389206
Target:  5'- cCAUUGGUGGAgggagagucgggucUCUCCGGGGGgGCCa- -3'
miRNA:   3'- -GUGGCCGCCU--------------GGGGGCCUCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 83980 0.67 0.383783
Target:  5'- uCGCCGG-GGACCgcgagCCGGAGGaguCGCCg- -3'
miRNA:   3'- -GUGGCCgCCUGGg----GGCCUCC---GCGGac -5'
5569 3' -66.8 NC_001806.1 + 4346 0.67 0.383783
Target:  5'- -cCCGGCGGcgcucgaugcgGCCCgCGGAGGcCGCg-- -3'
miRNA:   3'- guGGCCGCC-----------UGGGgGCCUCC-GCGgac -5'
5569 3' -66.8 NC_001806.1 + 112328 0.67 0.383012
Target:  5'- ---aGGCGGGCCaccgCCgGGAGGCcgucgagGCCUGg -3'
miRNA:   3'- guggCCGCCUGG----GGgCCUCCG-------CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 29769 0.67 0.381474
Target:  5'- -cCCGcCGGACgCCCCGcgcccccccacgcaGAGGCGCCg- -3'
miRNA:   3'- guGGCcGCCUG-GGGGC--------------CUCCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.