Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 77450 | 0.69 | 0.732176 |
Target: 5'- gCCCGGgcgUCCGCCCCaCCcgGccaagaggCCGAc -3' miRNA: 3'- -GGGUCaa-AGGUGGGG-GGuaCa-------GGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 80271 | 0.69 | 0.738022 |
Target: 5'- gCCCGGUUUcCCGCCgCCCCAcuacacggcagCCGGUg -3' miRNA: 3'- -GGGUCAAA-GGUGG-GGGGUaca--------GGCUA- -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 60309 | 0.69 | 0.741901 |
Target: 5'- cCCCAG-UUCCugGCCCUCUuUGUCCGc- -3' miRNA: 3'- -GGGUCaAAGG--UGGGGGGuACAGGCua -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 34840 | 0.69 | 0.751531 |
Target: 5'- uCCCGGcagCCACgCCCCCAgcGUCgGGUg -3' miRNA: 3'- -GGGUCaaaGGUG-GGGGGUa-CAGgCUA- -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 50938 | 0.69 | 0.751531 |
Target: 5'- cCUCAGcg-CCccgGgCCCCCGUGUCCGGg -3' miRNA: 3'- -GGGUCaaaGG---UgGGGGGUACAGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 69868 | 0.69 | 0.761057 |
Target: 5'- gCCCAGcca-CGCCCCCUcUGUCCa-- -3' miRNA: 3'- -GGGUCaaagGUGGGGGGuACAGGcua -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 143433 | 0.68 | 0.788919 |
Target: 5'- gCCCGGcccgcgcucCCACCCCCCgggccGUGUCCu-- -3' miRNA: 3'- -GGGUCaaa------GGUGGGGGG-----UACAGGcua -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 115811 | 0.68 | 0.80681 |
Target: 5'- cCCUAGcc-CCGCCCCCUuUGUCCc-- -3' miRNA: 3'- -GGGUCaaaGGUGGGGGGuACAGGcua -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 19333 | 0.68 | 0.815525 |
Target: 5'- gUCCAGaaaaaaCCGCCCCCCAaGccUCCGGg -3' miRNA: 3'- -GGGUCaaa---GGUGGGGGGUaC--AGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 45135 | 0.67 | 0.824074 |
Target: 5'- gCCAGUcgCCAUcguaCCCCCGacccaagcUGUCCGGc -3' miRNA: 3'- gGGUCAaaGGUG----GGGGGU--------ACAGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 46166 | 0.66 | 0.898938 |
Target: 5'- aCCCAcca-CCGCCCCCCGggccccCCGAa -3' miRNA: 3'- -GGGUcaaaGGUGGGGGGUaca---GGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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