miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5570 3' -58.2 NC_001806.1 + 99559 0.66 0.848259
Target:  5'- -gCCUCcgguugggAUcCGgUGGCGGCGGGGGGGa -3'
miRNA:   3'- caGGAG--------UA-GUgGCUGCUGCCCCUCCa -5'
5570 3' -58.2 NC_001806.1 + 141787 0.66 0.839571
Target:  5'- cUCUUCGgucuggCACCGACGAuuauauuCGGccaGGAGGUg -3'
miRNA:   3'- cAGGAGUa-----GUGGCUGCU-------GCC---CCUCCA- -5'
5570 3' -58.2 NC_001806.1 + 5141 0.66 0.815644
Target:  5'- cUCCgacgcCAUCGCCGAUG-CGGGGcgauccuccGGGg -3'
miRNA:   3'- cAGGa----GUAGUGGCUGCuGCCCC---------UCCa -5'
5570 3' -58.2 NC_001806.1 + 73124 0.67 0.807072
Target:  5'- -gCCg-GUCGCCGA-GGCGGGcGAGGa -3'
miRNA:   3'- caGGagUAGUGGCUgCUGCCC-CUCCa -5'
5570 3' -58.2 NC_001806.1 + 59797 0.67 0.789481
Target:  5'- aUCUUCGUUACCGAUcGCGGGGucaauuguauGGa -3'
miRNA:   3'- cAGGAGUAGUGGCUGcUGCCCCu---------CCa -5'
5570 3' -58.2 NC_001806.1 + 2488 0.67 0.784094
Target:  5'- cGUCgUCGUCgccGCCGccgcacgcggccuggGCGGCGGGGGcGGg -3'
miRNA:   3'- -CAGgAGUAG---UGGC---------------UGCUGCCCCU-CCa -5'
5570 3' -58.2 NC_001806.1 + 110201 0.67 0.780477
Target:  5'- cGUCCUCGUgcgUGCCGcACG-CGGuGGGGGc -3'
miRNA:   3'- -CAGGAGUA---GUGGC-UGCuGCC-CCUCCa -5'
5570 3' -58.2 NC_001806.1 + 4541 0.67 0.780477
Target:  5'- cGUCCUCGUCcucguCgGACGACGaGGacgaaGAGGa -3'
miRNA:   3'- -CAGGAGUAGu----GgCUGCUGC-CC-----CUCCa -5'
5570 3' -58.2 NC_001806.1 + 12679 0.67 0.771345
Target:  5'- gGUCgUCuUC-CCgGAUGugGGGGAGGc -3'
miRNA:   3'- -CAGgAGuAGuGG-CUGCugCCCCUCCa -5'
5570 3' -58.2 NC_001806.1 + 41240 0.67 0.762095
Target:  5'- -gCCUCGUggaGCCGGCGAaaGGGGAcGGg -3'
miRNA:   3'- caGGAGUAg--UGGCUGCUg-CCCCU-CCa -5'
5570 3' -58.2 NC_001806.1 + 33640 0.67 0.762095
Target:  5'- -aCC-CA-CACgGGCGGgGGGGGGGUg -3'
miRNA:   3'- caGGaGUaGUGgCUGCUgCCCCUCCA- -5'
5570 3' -58.2 NC_001806.1 + 26811 0.68 0.752734
Target:  5'- -gCCUgCGcCugCGACGcgcggGCGGGGAGGg -3'
miRNA:   3'- caGGA-GUaGugGCUGC-----UGCCCCUCCa -5'
5570 3' -58.2 NC_001806.1 + 151318 0.68 0.733715
Target:  5'- -gCCUCuggCGCCGGCucgGGCGGGGGGc- -3'
miRNA:   3'- caGGAGua-GUGGCUG---CUGCCCCUCca -5'
5570 3' -58.2 NC_001806.1 + 70618 0.68 0.733715
Target:  5'- uUCCgUCAUCACCGAaaccaCGGCGcaccuGGGGGUg -3'
miRNA:   3'- cAGG-AGUAGUGGCU-----GCUGCc----CCUCCA- -5'
5570 3' -58.2 NC_001806.1 + 100380 0.69 0.684839
Target:  5'- cUCC-CGUCGCCgGGCGGCGcGGGGGc -3'
miRNA:   3'- cAGGaGUAGUGG-CUGCUGCcCCUCCa -5'
5570 3' -58.2 NC_001806.1 + 90519 0.69 0.654943
Target:  5'- -aCCUCAaaCACgaGACGACgGGGGAGGc -3'
miRNA:   3'- caGGAGUa-GUGg-CUGCUG-CCCCUCCa -5'
5570 3' -58.2 NC_001806.1 + 55061 0.7 0.62489
Target:  5'- -cCCUcCAUCACCG-CGugGGgcuGGAGGg -3'
miRNA:   3'- caGGA-GUAGUGGCuGCugCC---CCUCCa -5'
5570 3' -58.2 NC_001806.1 + 41038 0.7 0.62489
Target:  5'- cUCCUCAUCACCGGCGucgucguaGCaGGGAa-- -3'
miRNA:   3'- cAGGAGUAGUGGCUGC--------UGcCCCUcca -5'
5570 3' -58.2 NC_001806.1 + 4383 0.7 0.621884
Target:  5'- gGUCCUCGcCGCCGcccggggcuugggcGCGGCcucggagaGGGGGGGUg -3'
miRNA:   3'- -CAGGAGUaGUGGC--------------UGCUG--------CCCCUCCA- -5'
5570 3' -58.2 NC_001806.1 + 56647 0.7 0.600871
Target:  5'- -aCCUCAUCgGCCGGCGGCccgugggaucguuGGGGGGUc -3'
miRNA:   3'- caGGAGUAG-UGGCUGCUGc------------CCCUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.