Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5570 | 3' | -58.2 | NC_001806.1 | + | 99559 | 0.66 | 0.848259 |
Target: 5'- -gCCUCcgguugggAUcCGgUGGCGGCGGGGGGGa -3' miRNA: 3'- caGGAG--------UA-GUgGCUGCUGCCCCUCCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 141787 | 0.66 | 0.839571 |
Target: 5'- cUCUUCGgucuggCACCGACGAuuauauuCGGccaGGAGGUg -3' miRNA: 3'- cAGGAGUa-----GUGGCUGCU-------GCC---CCUCCA- -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 5141 | 0.66 | 0.815644 |
Target: 5'- cUCCgacgcCAUCGCCGAUG-CGGGGcgauccuccGGGg -3' miRNA: 3'- cAGGa----GUAGUGGCUGCuGCCCC---------UCCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 73124 | 0.67 | 0.807072 |
Target: 5'- -gCCg-GUCGCCGA-GGCGGGcGAGGa -3' miRNA: 3'- caGGagUAGUGGCUgCUGCCC-CUCCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 59797 | 0.67 | 0.789481 |
Target: 5'- aUCUUCGUUACCGAUcGCGGGGucaauuguauGGa -3' miRNA: 3'- cAGGAGUAGUGGCUGcUGCCCCu---------CCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 2488 | 0.67 | 0.784094 |
Target: 5'- cGUCgUCGUCgccGCCGccgcacgcggccuggGCGGCGGGGGcGGg -3' miRNA: 3'- -CAGgAGUAG---UGGC---------------UGCUGCCCCU-CCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 110201 | 0.67 | 0.780477 |
Target: 5'- cGUCCUCGUgcgUGCCGcACG-CGGuGGGGGc -3' miRNA: 3'- -CAGGAGUA---GUGGC-UGCuGCC-CCUCCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 4541 | 0.67 | 0.780477 |
Target: 5'- cGUCCUCGUCcucguCgGACGACGaGGacgaaGAGGa -3' miRNA: 3'- -CAGGAGUAGu----GgCUGCUGC-CC-----CUCCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 12679 | 0.67 | 0.771345 |
Target: 5'- gGUCgUCuUC-CCgGAUGugGGGGAGGc -3' miRNA: 3'- -CAGgAGuAGuGG-CUGCugCCCCUCCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 41240 | 0.67 | 0.762095 |
Target: 5'- -gCCUCGUggaGCCGGCGAaaGGGGAcGGg -3' miRNA: 3'- caGGAGUAg--UGGCUGCUg-CCCCU-CCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 33640 | 0.67 | 0.762095 |
Target: 5'- -aCC-CA-CACgGGCGGgGGGGGGGUg -3' miRNA: 3'- caGGaGUaGUGgCUGCUgCCCCUCCA- -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 26811 | 0.68 | 0.752734 |
Target: 5'- -gCCUgCGcCugCGACGcgcggGCGGGGAGGg -3' miRNA: 3'- caGGA-GUaGugGCUGC-----UGCCCCUCCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 70618 | 0.68 | 0.733715 |
Target: 5'- uUCCgUCAUCACCGAaaccaCGGCGcaccuGGGGGUg -3' miRNA: 3'- cAGG-AGUAGUGGCU-----GCUGCc----CCUCCA- -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 151318 | 0.68 | 0.733715 |
Target: 5'- -gCCUCuggCGCCGGCucgGGCGGGGGGc- -3' miRNA: 3'- caGGAGua-GUGGCUG---CUGCCCCUCca -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 100380 | 0.69 | 0.684839 |
Target: 5'- cUCC-CGUCGCCgGGCGGCGcGGGGGc -3' miRNA: 3'- cAGGaGUAGUGG-CUGCUGCcCCUCCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 90519 | 0.69 | 0.654943 |
Target: 5'- -aCCUCAaaCACgaGACGACgGGGGAGGc -3' miRNA: 3'- caGGAGUa-GUGg-CUGCUG-CCCCUCCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 55061 | 0.7 | 0.62489 |
Target: 5'- -cCCUcCAUCACCG-CGugGGgcuGGAGGg -3' miRNA: 3'- caGGA-GUAGUGGCuGCugCC---CCUCCa -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 41038 | 0.7 | 0.62489 |
Target: 5'- cUCCUCAUCACCGGCGucgucguaGCaGGGAa-- -3' miRNA: 3'- cAGGAGUAGUGGCUGC--------UGcCCCUcca -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 4383 | 0.7 | 0.621884 |
Target: 5'- gGUCCUCGcCGCCGcccggggcuugggcGCGGCcucggagaGGGGGGGUg -3' miRNA: 3'- -CAGGAGUaGUGGC--------------UGCUG--------CCCCUCCA- -5' |
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5570 | 3' | -58.2 | NC_001806.1 | + | 56647 | 0.7 | 0.600871 |
Target: 5'- -aCCUCAUCgGCCGGCGGCccgugggaucguuGGGGGGUc -3' miRNA: 3'- caGGAGUAG-UGGCUGCUGc------------CCCUCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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