miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5570 5' -54.1 NC_001806.1 + 91698 0.66 0.965222
Target:  5'- -cGCCGCCCGCGGagccaucGGCGUCu-- -3'
miRNA:   3'- acUGGCGGGUGCUgaaa---CUGCAGcac -5'
5570 5' -54.1 NC_001806.1 + 132834 0.66 0.961847
Target:  5'- aGAcCCGCCCGCGGC-----CGUCGg- -3'
miRNA:   3'- aCU-GGCGGGUGCUGaaacuGCAGCac -5'
5570 5' -54.1 NC_001806.1 + 52875 0.66 0.958251
Target:  5'- cGACCGCCgGCGGC---GACGUg--- -3'
miRNA:   3'- aCUGGCGGgUGCUGaaaCUGCAgcac -5'
5570 5' -54.1 NC_001806.1 + 43485 0.66 0.950378
Target:  5'- aGGCC-CCCACGAUc--GACGgggcCGUGg -3'
miRNA:   3'- aCUGGcGGGUGCUGaaaCUGCa---GCAC- -5'
5570 5' -54.1 NC_001806.1 + 30302 0.66 0.950378
Target:  5'- cGGCCGCCCGCcccgcgGACgc--GCGcCGUGu -3'
miRNA:   3'- aCUGGCGGGUG------CUGaaacUGCaGCAC- -5'
5570 5' -54.1 NC_001806.1 + 101911 0.66 0.950378
Target:  5'- cGGCCGCCC-CGcCUg-GGCGUCa-- -3'
miRNA:   3'- aCUGGCGGGuGCuGAaaCUGCAGcac -5'
5570 5' -54.1 NC_001806.1 + 42017 0.67 0.946093
Target:  5'- -uGCUGgCCGCGGggUUGGgGUCGUGg -3'
miRNA:   3'- acUGGCgGGUGCUgaAACUgCAGCAC- -5'
5570 5' -54.1 NC_001806.1 + 89752 0.67 0.936812
Target:  5'- cGGCCacGCCCAcCGGCUgaUGACGcgcggggCGUGg -3'
miRNA:   3'- aCUGG--CGGGU-GCUGAa-ACUGCa------GCAC- -5'
5570 5' -54.1 NC_001806.1 + 139843 0.67 0.936812
Target:  5'- gGACCGCCUGCcGCgcggaGGCGUUGUu -3'
miRNA:   3'- aCUGGCGGGUGcUGaaa--CUGCAGCAc -5'
5570 5' -54.1 NC_001806.1 + 90281 0.67 0.933841
Target:  5'- cUGACCGUggagaGCGGCUUUgaggccaacguggccGugGUCGUGg -3'
miRNA:   3'- -ACUGGCGgg---UGCUGAAA---------------CugCAGCAC- -5'
5570 5' -54.1 NC_001806.1 + 28682 0.67 0.931812
Target:  5'- -aGCCGCCCGCcauAUUUggggGACGcCGUGg -3'
miRNA:   3'- acUGGCGGGUGc--UGAAa---CUGCaGCAC- -5'
5570 5' -54.1 NC_001806.1 + 4493 0.67 0.92657
Target:  5'- cGACgGCCCGCGcCUc--GCGUgCGUGg -3'
miRNA:   3'- aCUGgCGGGUGCuGAaacUGCA-GCAC- -5'
5570 5' -54.1 NC_001806.1 + 147038 0.67 0.92657
Target:  5'- aGGCCGCCCGCGGg---GACGgcccCGg- -3'
miRNA:   3'- aCUGGCGGGUGCUgaaaCUGCa---GCac -5'
5570 5' -54.1 NC_001806.1 + 4628 0.68 0.909399
Target:  5'- aUGGCCGCCaC-CGGCcgUGACGaCGUc -3'
miRNA:   3'- -ACUGGCGG-GuGCUGaaACUGCaGCAc -5'
5570 5' -54.1 NC_001806.1 + 26957 0.68 0.909399
Target:  5'- cGGCCGCCCGCcuGGCgcgccGCGgcUCGUGg -3'
miRNA:   3'- aCUGGCGGGUG--CUGaaac-UGC--AGCAC- -5'
5570 5' -54.1 NC_001806.1 + 35774 0.68 0.909399
Target:  5'- -aGCCGUCCGgGGCUUUGGCGccCGa- -3'
miRNA:   3'- acUGGCGGGUgCUGAAACUGCa-GCac -5'
5570 5' -54.1 NC_001806.1 + 4392 0.68 0.903196
Target:  5'- -cGCCGCCCGgGGCUUgGGCG-CGg- -3'
miRNA:   3'- acUGGCGGGUgCUGAAaCUGCaGCac -5'
5570 5' -54.1 NC_001806.1 + 83192 0.68 0.903196
Target:  5'- -uGCCGCCCGucgguacgcuCGACgagGACGUCGc- -3'
miRNA:   3'- acUGGCGGGU----------GCUGaaaCUGCAGCac -5'
5570 5' -54.1 NC_001806.1 + 89003 0.69 0.868713
Target:  5'- -aGCCGCCCGaccCGACgcggagGACGUCGc- -3'
miRNA:   3'- acUGGCGGGU---GCUGaaa---CUGCAGCac -5'
5570 5' -54.1 NC_001806.1 + 3467 0.69 0.861153
Target:  5'- cGGCCGgCCugGGCgcggcgcccGGCGUCGUc -3'
miRNA:   3'- aCUGGCgGGugCUGaaa------CUGCAGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.