Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5570 | 5' | -54.1 | NC_001806.1 | + | 50387 | 0.7 | 0.837244 |
Target: 5'- aGACgGUCCAgUGGCUcucgGugGUCGUGg -3' miRNA: 3'- aCUGgCGGGU-GCUGAaa--CugCAGCAC- -5' |
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5570 | 5' | -54.1 | NC_001806.1 | + | 90905 | 0.7 | 0.837244 |
Target: 5'- cGGCCGCCCACcuGGCgUUUGACGa---- -3' miRNA: 3'- aCUGGCGGGUG--CUG-AAACUGCagcac -5' |
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5570 | 5' | -54.1 | NC_001806.1 | + | 4290 | 0.7 | 0.837244 |
Target: 5'- gGGCUGCCCggccgugaaGCGGCccgUGGCGUCGc- -3' miRNA: 3'- aCUGGCGGG---------UGCUGaa-ACUGCAGCac -5' |
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5570 | 5' | -54.1 | NC_001806.1 | + | 89595 | 0.7 | 0.843793 |
Target: 5'- gGACCGCCgGCGGCcgacaggagagUGACGUagccggugggCGUGg -3' miRNA: 3'- aCUGGCGGgUGCUGaa---------ACUGCA----------GCAC- -5' |
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5570 | 5' | -54.1 | NC_001806.1 | + | 69684 | 0.7 | 0.845412 |
Target: 5'- cUGGCgaGCCUGCGGCg--GGCGcUCGUGg -3' miRNA: 3'- -ACUGg-CGGGUGCUGaaaCUGC-AGCAC- -5' |
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5570 | 5' | -54.1 | NC_001806.1 | + | 3467 | 0.69 | 0.861153 |
Target: 5'- cGGCCGgCCugGGCgcggcgcccGGCGUCGUc -3' miRNA: 3'- aCUGGCgGGugCUGaaa------CUGCAGCAc -5' |
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5570 | 5' | -54.1 | NC_001806.1 | + | 89003 | 0.69 | 0.868713 |
Target: 5'- -aGCCGCCCGaccCGACgcggagGACGUCGc- -3' miRNA: 3'- acUGGCGGGU---GCUGaaa---CUGCAGCac -5' |
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5570 | 5' | -54.1 | NC_001806.1 | + | 4392 | 0.68 | 0.903196 |
Target: 5'- -cGCCGCCCGgGGCUUgGGCG-CGg- -3' miRNA: 3'- acUGGCGGGUgCUGAAaCUGCaGCac -5' |
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5570 | 5' | -54.1 | NC_001806.1 | + | 83192 | 0.68 | 0.903196 |
Target: 5'- -uGCCGCCCGucgguacgcuCGACgagGACGUCGc- -3' miRNA: 3'- acUGGCGGGU----------GCUGaaaCUGCAGCac -5' |
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5570 | 5' | -54.1 | NC_001806.1 | + | 91698 | 0.66 | 0.965222 |
Target: 5'- -cGCCGCCCGCGGagccaucGGCGUCu-- -3' miRNA: 3'- acUGGCGGGUGCUgaaa---CUGCAGcac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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