miRNA display CGI


Results 61 - 80 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 44404 0.67 0.756234
Target:  5'- gGAGGCCG-CgGGCGuuGAGCGacGaCCGCCc -3'
miRNA:   3'- aUUCCGGUaGgUCGC--UUCGU--C-GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 35116 0.67 0.756234
Target:  5'- aAAGGCgCGUCCcGUGGAcGCGGCCcUCg -3'
miRNA:   3'- aUUCCG-GUAGGuCGCUU-CGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 51578 0.67 0.746558
Target:  5'- --cGGCCG-CCacccaggcgcugGGCGAGGUggAGCUGCCc -3'
miRNA:   3'- auuCCGGUaGG------------UCGCUUCG--UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 133237 0.67 0.746558
Target:  5'- -cGGGCCAUCgAGaCGGccguGGgAGCCGUg -3'
miRNA:   3'- auUCCGGUAGgUC-GCU----UCgUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 70259 0.67 0.746558
Target:  5'- --cGGCCccugGUCCAGCu--GCAGCCcCCc -3'
miRNA:   3'- auuCCGG----UAGGUCGcuuCGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 140538 0.67 0.746558
Target:  5'- cGGGGa----CGGCGggGCagAGCCGCCc -3'
miRNA:   3'- aUUCCgguagGUCGCuuCG--UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 21951 0.67 0.736781
Target:  5'- -cGGGCCcuUCaCGGCcGGGCAGCC-CCg -3'
miRNA:   3'- auUCCGGu-AG-GUCGcUUCGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 125939 0.67 0.736781
Target:  5'- -uGGGCCcugcUCCGGCGggGCcucacGaCCGCa -3'
miRNA:   3'- auUCCGGu---AGGUCGCuuCGu----C-GGCGg -5'
5571 3' -57.6 NC_001806.1 + 1703 0.67 0.736781
Target:  5'- --cGGUgGUCCc-CGAGGCcGCCGCCn -3'
miRNA:   3'- auuCCGgUAGGucGCUUCGuCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 95598 0.67 0.736781
Target:  5'- -cGGGUCAgcgUCCacGGCGAGGU-GCUGCCc -3'
miRNA:   3'- auUCCGGU---AGG--UCGCUUCGuCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 28160 0.67 0.736781
Target:  5'- gAGGGCCGcccCCAGCGcgagguGAGgGGCCgggcGCCa -3'
miRNA:   3'- aUUCCGGUa--GGUCGC------UUCgUCGG----CGG- -5'
5571 3' -57.6 NC_001806.1 + 35511 0.68 0.726912
Target:  5'- cGAGG-CGUCgGaGCGggGCcgcucacgccaAGCCGCCc -3'
miRNA:   3'- aUUCCgGUAGgU-CGCuuCG-----------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 53898 0.68 0.726912
Target:  5'- cAGGGUCG-CCggGGCGcuaCAGCCGCCg -3'
miRNA:   3'- aUUCCGGUaGG--UCGCuucGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 57311 0.68 0.726912
Target:  5'- cAGGGCCc-CCAcgcacGCGAGGUguGGCCGUCc -3'
miRNA:   3'- aUUCCGGuaGGU-----CGCUUCG--UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 126547 0.68 0.726912
Target:  5'- aGAGGCCcacgccUCgGGCGAaaaaaGGCGGugcuCCGCCg -3'
miRNA:   3'- aUUCCGGu-----AGgUCGCU-----UCGUC----GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 67464 0.68 0.726912
Target:  5'- -cAGGCCAagcaaccaCAGCGu-GCuGGCCGCCc -3'
miRNA:   3'- auUCCGGUag------GUCGCuuCG-UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 5933 0.68 0.723934
Target:  5'- --uGGCCggCgGGCGGgaccgccccaagggGGCggGGCCGCCg -3'
miRNA:   3'- auuCCGGuaGgUCGCU--------------UCG--UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 58325 0.68 0.71696
Target:  5'- ----aCCGUCUuGGCGuuGGCGGCCGCCu -3'
miRNA:   3'- auuccGGUAGG-UCGCu-UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 43278 0.68 0.71696
Target:  5'- --cGGCCGUUCcgcccucggaGGCGGAGCcgcGGCUGCa -3'
miRNA:   3'- auuCCGGUAGG----------UCGCUUCG---UCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 23306 0.68 0.71696
Target:  5'- --cGGCCcggcCCGGCcgcccgGAGGCGGCgGCCc -3'
miRNA:   3'- auuCCGGua--GGUCG------CUUCGUCGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.