Results 41 - 60 of 210 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 69593 | 0.67 | 0.78456 |
Target: 5'- -cGGGCgGcUCuGCGAGGCGGUCgGCCu -3' miRNA: 3'- auUCCGgUaGGuCGCUUCGUCGG-CGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 102162 | 0.67 | 0.78456 |
Target: 5'- ---uGCCGUUC-GCGAGG-AGCCGCUg -3' miRNA: 3'- auucCGGUAGGuCGCUUCgUCGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 89495 | 0.67 | 0.78456 |
Target: 5'- aAGGGCCuuguuuGUCUGGCGGauccgggcGGCgAGCUGCUg -3' miRNA: 3'- aUUCCGG------UAGGUCGCU--------UCG-UCGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 86066 | 0.67 | 0.78456 |
Target: 5'- cUGGGGCggcggCGUCUAGCucgcggaGGGCGGCCaGCCg -3' miRNA: 3'- -AUUCCG-----GUAGGUCGc------UUCGUCGG-CGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 111223 | 0.67 | 0.78178 |
Target: 5'- cGGGGCC-UCgauguggguggcggCGGCGGacAGCuuuGCCGCCu -3' miRNA: 3'- aUUCCGGuAG--------------GUCGCU--UCGu--CGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 19033 | 0.67 | 0.775244 |
Target: 5'- gGGGGuCCAUCguGCGcuGCu-CCGCCu -3' miRNA: 3'- aUUCC-GGUAGguCGCuuCGucGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 73540 | 0.67 | 0.775244 |
Target: 5'- --uGGCC-UCCAcGCGccuGAGCcuggccgacguGGCCGCCc -3' miRNA: 3'- auuCCGGuAGGU-CGC---UUCG-----------UCGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 64169 | 0.67 | 0.775244 |
Target: 5'- -cAGGCCAaaaagCCGGCGAuGCGGgUGUa -3' miRNA: 3'- auUCCGGUa----GGUCGCUuCGUCgGCGg -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 74538 | 0.67 | 0.775244 |
Target: 5'- -uGGGCCAgcagcuggaCAGCGAcGCGGCCuuuguuccugcGCCc -3' miRNA: 3'- auUCCGGUag-------GUCGCUuCGUCGG-----------CGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 30183 | 0.67 | 0.775244 |
Target: 5'- -cGGGCCccCC-GCGuccGCGGCCGCg -3' miRNA: 3'- auUCCGGuaGGuCGCuu-CGUCGGCGg -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 30230 | 0.67 | 0.775244 |
Target: 5'- --cGGCCGUggccCCGuGCGugcGAGC-GCCGCCu -3' miRNA: 3'- auuCCGGUA----GGU-CGC---UUCGuCGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 121739 | 0.67 | 0.772424 |
Target: 5'- --uGGCCAUCCcGUGGAuacgucacccugcuGCAGgccccCCGCCg -3' miRNA: 3'- auuCCGGUAGGuCGCUU--------------CGUC-----GGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 74143 | 0.67 | 0.771481 |
Target: 5'- cAAGGCUcuacaggCCAGCGAcaacaacgaccgccGGUuucacguggcuucGGCCGCCg -3' miRNA: 3'- aUUCCGGua-----GGUCGCU--------------UCG-------------UCGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 133069 | 0.67 | 0.765799 |
Target: 5'- --cGGCagcUCCugGGUGggGUaauGGCCGCCg -3' miRNA: 3'- auuCCGgu-AGG--UCGCuuCG---UCGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 148192 | 0.67 | 0.765799 |
Target: 5'- -cGGGgCGUCCGGCGGggGGCGGgCGgUa -3' miRNA: 3'- auUCCgGUAGGUCGCU--UCGUCgGCgG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 84909 | 0.67 | 0.765799 |
Target: 5'- -cGGGCCucCCGGaaGAGCcuGCCGCCu -3' miRNA: 3'- auUCCGGuaGGUCgcUUCGu-CGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 4593 | 0.67 | 0.764848 |
Target: 5'- cGAGGaCCcggaGUCCGaCGAGGUcgaugacgccgauGGCCGCCa -3' miRNA: 3'- aUUCC-GG----UAGGUcGCUUCG-------------UCGGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 44404 | 0.67 | 0.756234 |
Target: 5'- gGAGGCCG-CgGGCGuuGAGCGacGaCCGCCc -3' miRNA: 3'- aUUCCGGUaGgUCGC--UUCGU--C-GGCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 135767 | 0.67 | 0.756234 |
Target: 5'- gAAGGCCu---GGCGAAGCuGCggCGCCc -3' miRNA: 3'- aUUCCGGuaggUCGCUUCGuCG--GCGG- -5' |
|||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 151340 | 0.67 | 0.756234 |
Target: 5'- gGGGGCUGUCCGGC----CAGUCGUCg -3' miRNA: 3'- aUUCCGGUAGGUCGcuucGUCGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home