miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 133237 0.67 0.746558
Target:  5'- -cGGGCCAUCgAGaCGGccguGGgAGCCGUg -3'
miRNA:   3'- auUCCGGUAGgUC-GCU----UCgUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 28160 0.67 0.736781
Target:  5'- gAGGGCCGcccCCAGCGcgagguGAGgGGCCgggcGCCa -3'
miRNA:   3'- aUUCCGGUa--GGUCGC------UUCgUCGG----CGG- -5'
5571 3' -57.6 NC_001806.1 + 51578 0.67 0.746558
Target:  5'- --cGGCCG-CCacccaggcgcugGGCGAGGUggAGCUGCCc -3'
miRNA:   3'- auuCCGGUaGG------------UCGCUUCG--UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 34298 0.67 0.756234
Target:  5'- aUGGGGUUuagCGGCGGggGGCGGCgCGCCg -3'
miRNA:   3'- -AUUCCGGuagGUCGCU--UCGUCG-GCGG- -5'
5571 3' -57.6 NC_001806.1 + 121739 0.67 0.772424
Target:  5'- --uGGCCAUCCcGUGGAuacgucacccugcuGCAGgccccCCGCCg -3'
miRNA:   3'- auuCCGGUAGGuCGCUU--------------CGUC-----GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 102162 0.67 0.78456
Target:  5'- ---uGCCGUUC-GCGAGG-AGCCGCUg -3'
miRNA:   3'- auucCGGUAGGuCGCUUCgUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 70259 0.67 0.746558
Target:  5'- --cGGCCccugGUCCAGCu--GCAGCCcCCc -3'
miRNA:   3'- auuCCGG----UAGGUCGcuuCGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 44404 0.67 0.756234
Target:  5'- gGAGGCCG-CgGGCGuuGAGCGacGaCCGCCc -3'
miRNA:   3'- aUUCCGGUaGgUCGC--UUCGU--C-GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 74143 0.67 0.771481
Target:  5'- cAAGGCUcuacaggCCAGCGAcaacaacgaccgccGGUuucacguggcuucGGCCGCCg -3'
miRNA:   3'- aUUCCGGua-----GGUCGCU--------------UCG-------------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 84909 0.67 0.765799
Target:  5'- -cGGGCCucCCGGaaGAGCcuGCCGCCu -3'
miRNA:   3'- auUCCGGuaGGUCgcUUCGu-CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 35116 0.67 0.756234
Target:  5'- aAAGGCgCGUCCcGUGGAcGCGGCCcUCg -3'
miRNA:   3'- aUUCCG-GUAGGuCGCUU-CGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 148192 0.67 0.765799
Target:  5'- -cGGGgCGUCCGGCGGggGGCGGgCGgUa -3'
miRNA:   3'- auUCCgGUAGGUCGCU--UCGUCgGCgG- -5'
5571 3' -57.6 NC_001806.1 + 140538 0.67 0.746558
Target:  5'- cGGGGa----CGGCGggGCagAGCCGCCc -3'
miRNA:   3'- aUUCCgguagGUCGCuuCG--UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 135767 0.67 0.756234
Target:  5'- gAAGGCCu---GGCGAAGCuGCggCGCCc -3'
miRNA:   3'- aUUCCGGuaggUCGCUUCGuCG--GCGG- -5'
5571 3' -57.6 NC_001806.1 + 21951 0.67 0.736781
Target:  5'- -cGGGCCcuUCaCGGCcGGGCAGCC-CCg -3'
miRNA:   3'- auUCCGGu-AG-GUCGcUUCGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 95598 0.67 0.736781
Target:  5'- -cGGGUCAgcgUCCacGGCGAGGU-GCUGCCc -3'
miRNA:   3'- auUCCGGU---AGG--UCGCUUCGuCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 147983 0.67 0.78456
Target:  5'- aGGGGCCAgacgCCccccgcGGCGccGCGGCuCGCg -3'
miRNA:   3'- aUUCCGGUa---GG------UCGCuuCGUCG-GCGg -5'
5571 3' -57.6 NC_001806.1 + 133069 0.67 0.765799
Target:  5'- --cGGCagcUCCugGGUGggGUaauGGCCGCCg -3'
miRNA:   3'- auuCCGgu-AGG--UCGCuuCG---UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 86066 0.67 0.78456
Target:  5'- cUGGGGCggcggCGUCUAGCucgcggaGGGCGGCCaGCCg -3'
miRNA:   3'- -AUUCCG-----GUAGGUCGc------UUCGUCGG-CGG- -5'
5571 3' -57.6 NC_001806.1 + 4593 0.67 0.764848
Target:  5'- cGAGGaCCcggaGUCCGaCGAGGUcgaugacgccgauGGCCGCCa -3'
miRNA:   3'- aUUCC-GG----UAGGUcGCUUCG-------------UCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.