miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 21951 0.67 0.736781
Target:  5'- -cGGGCCcuUCaCGGCcGGGCAGCC-CCg -3'
miRNA:   3'- auUCCGGu-AG-GUCGcUUCGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 22167 0.73 0.420436
Target:  5'- cGAGGCC-UCgGGCGccccGGCGGCCGUg -3'
miRNA:   3'- aUUCCGGuAGgUCGCu---UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 22425 0.72 0.491625
Target:  5'- --cGGCCGcUUCGGCuGGggccuggcgcacgcGGCGGCCGCCg -3'
miRNA:   3'- auuCCGGU-AGGUCG-CU--------------UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 22569 0.66 0.794648
Target:  5'- gGGGGCCGcggggagccccggcgCCGGCGcagaugacgaggGGGUcGCCGCCg -3'
miRNA:   3'- aUUCCGGUa--------------GGUCGC------------UUCGuCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 22802 0.69 0.666287
Target:  5'- --uGGCCGUCgAGUGccuGGCcGCCuGCCg -3'
miRNA:   3'- auuCCGGUAGgUCGCu--UCGuCGG-CGG- -5'
5571 3' -57.6 NC_001806.1 + 22852 0.73 0.394429
Target:  5'- gAGGGCUucgaCGGCGAccuGGCGGCCGUCc -3'
miRNA:   3'- aUUCCGGuag-GUCGCU---UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 22900 0.66 0.793738
Target:  5'- --cGGCCcgCCAGCcccccGCGGCCGg- -3'
miRNA:   3'- auuCCGGuaGGUCGcuu--CGUCGGCgg -5'
5571 3' -57.6 NC_001806.1 + 23053 0.76 0.280891
Target:  5'- --uGGCCGgcggCAGCGAGGCcgccguGGCCGCCg -3'
miRNA:   3'- auuCCGGUag--GUCGCUUCG------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 23221 0.7 0.564854
Target:  5'- --cGGCCAgcgcaccggacgccgCCGacGCGcuGGCGGCCGCCg -3'
miRNA:   3'- auuCCGGUa--------------GGU--CGCu-UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 23306 0.68 0.71696
Target:  5'- --cGGCCcggcCCGGCcgcccgGAGGCGGCgGCCc -3'
miRNA:   3'- auuCCGGua--GGUCG------CUUCGUCGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 23469 0.69 0.666287
Target:  5'- -cGGGCCG-CC-GCGgcGCAGgcCCGCCc -3'
miRNA:   3'- auUCCGGUaGGuCGCuuCGUC--GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 23566 0.73 0.429332
Target:  5'- cGGGGCCcagCCacacGGCGGcgcccGCGGCCGCCg -3'
miRNA:   3'- aUUCCGGua-GG----UCGCUu----CGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 23935 0.75 0.344871
Target:  5'- --uGGCCGg-CGGCGggGCcugggggGGCCGCCg -3'
miRNA:   3'- auuCCGGUagGUCGCuuCG-------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 23986 0.68 0.686702
Target:  5'- -cGGGCUGUCCuGCcugcuGGCGGCCcugGCCa -3'
miRNA:   3'- auUCCGGUAGGuCGcu---UCGUCGG---CGG- -5'
5571 3' -57.6 NC_001806.1 + 24218 0.66 0.793738
Target:  5'- --uGGCCcgCCGacgggcccGCGGugucgcGGCAGCaCGCCu -3'
miRNA:   3'- auuCCGGuaGGU--------CGCU------UCGUCG-GCGG- -5'
5571 3' -57.6 NC_001806.1 + 24512 0.72 0.456669
Target:  5'- -cGGGCCGUgcugCCGGCGcuggacggccGGGCGGCgGCCu -3'
miRNA:   3'- auUCCGGUA----GGUCGC----------UUCGUCGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 24694 0.66 0.802768
Target:  5'- --cGGCCcggcCCGGUGgcGCGGgCCGCg -3'
miRNA:   3'- auuCCGGua--GGUCGCuuCGUC-GGCGg -5'
5571 3' -57.6 NC_001806.1 + 27250 0.74 0.385995
Target:  5'- -cGGGCCG-CCucgggGGCGGgacuggccaaucGGCGGCCGCCa -3'
miRNA:   3'- auUCCGGUaGG-----UCGCU------------UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 28160 0.67 0.736781
Target:  5'- gAGGGCCGcccCCAGCGcgagguGAGgGGCCgggcGCCa -3'
miRNA:   3'- aUUCCGGUa--GGUCGC------UUCgUCGG----CGG- -5'
5571 3' -57.6 NC_001806.1 + 29454 0.71 0.523811
Target:  5'- gGAGGCCGUCagGGCG-GGCAcgGCCGUg -3'
miRNA:   3'- aUUCCGGUAGg-UCGCuUCGU--CGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.