miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 23053 0.76 0.280891
Target:  5'- --uGGCCGgcggCAGCGAGGCcgccguGGCCGCCg -3'
miRNA:   3'- auuCCGGUag--GUCGCUUCG------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 93275 0.76 0.274322
Target:  5'- cGGGGCauUAUCUccgagGGCGggGCGGCCGUCg -3'
miRNA:   3'- aUUCCG--GUAGG-----UCGCuuCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 2652 0.77 0.237475
Target:  5'- -uAGGCC-UCCAGgGcGGCGGCCGCg -3'
miRNA:   3'- auUCCGGuAGGUCgCuUCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 3820 0.78 0.21528
Target:  5'- -cAGGCC--CCAGcCGAAGCGGCCgGCCg -3'
miRNA:   3'- auUCCGGuaGGUC-GCUUCGUCGG-CGG- -5'
5571 3' -57.6 NC_001806.1 + 1726 0.8 0.159131
Target:  5'- --cGGCCGUCCAGCGccGGCAGCacgGCCc -3'
miRNA:   3'- auuCCGGUAGGUCGCu-UCGUCGg--CGG- -5'
5571 3' -57.6 NC_001806.1 + 2252 0.74 0.361416
Target:  5'- cAGGGCCG-CCAGC-AGGCAGgacagcCCGCCg -3'
miRNA:   3'- aUUCCGGUaGGUCGcUUCGUC------GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 3776 0.74 0.369487
Target:  5'- --cGGUCGUaUCGGCGGcucauggccacGGCGGCCGCCg -3'
miRNA:   3'- auuCCGGUA-GGUCGCU-----------UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 147035 0.73 0.438338
Target:  5'- gUGAGGCCG-CCcGCGggGaCGGCC-CCg -3'
miRNA:   3'- -AUUCCGGUaGGuCGCuuC-GUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 3365 0.73 0.438338
Target:  5'- -cGGGCCccggCCAGCcccGGGaCGGCCGCCa -3'
miRNA:   3'- auUCCGGua--GGUCGc--UUC-GUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 21764 0.73 0.429332
Target:  5'- -cGGGCCGUCgGGCGggGU--CCGUCg -3'
miRNA:   3'- auUCCGGUAGgUCGCuuCGucGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 151282 0.73 0.429332
Target:  5'- gGGGGCCGgggCCGG-GggGCGGCgGCg -3'
miRNA:   3'- aUUCCGGUa--GGUCgCuuCGUCGgCGg -5'
5571 3' -57.6 NC_001806.1 + 23566 0.73 0.429332
Target:  5'- cGGGGCCcagCCacacGGCGGcgcccGCGGCCGCCg -3'
miRNA:   3'- aUUCCGGua-GG----UCGCUu----CGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 109519 0.73 0.420436
Target:  5'- cAGGGCC-UCCAGCGAgcucGGgAGCCGg- -3'
miRNA:   3'- aUUCCGGuAGGUCGCU----UCgUCGGCgg -5'
5571 3' -57.6 NC_001806.1 + 30915 0.73 0.420436
Target:  5'- cGGGGCCGUCCccGCG-GGCGGCCuaCg -3'
miRNA:   3'- aUUCCGGUAGGu-CGCuUCGUCGGcgG- -5'
5571 3' -57.6 NC_001806.1 + 22167 0.73 0.420436
Target:  5'- cGAGGCC-UCgGGCGccccGGCGGCCGUg -3'
miRNA:   3'- aUUCCGGuAGgUCGCu---UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 2132 0.73 0.411652
Target:  5'- gAAGGCCAggUCCcGCGuggacagcAGCAGCaCGCCc -3'
miRNA:   3'- aUUCCGGU--AGGuCGCu-------UCGUCG-GCGG- -5'
5571 3' -57.6 NC_001806.1 + 144188 0.73 0.394429
Target:  5'- --cGGCCGcCgCAGcCGccGCAGCCGCCg -3'
miRNA:   3'- auuCCGGUaG-GUC-GCuuCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 22852 0.73 0.394429
Target:  5'- gAGGGCUucgaCGGCGAccuGGCGGCCGUCc -3'
miRNA:   3'- aUUCCGGuag-GUCGCU---UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 27250 0.74 0.385995
Target:  5'- -cGGGCCG-CCucgggGGCGGgacuggccaaucGGCGGCCGCCa -3'
miRNA:   3'- auUCCGGUaGG-----UCGCU------------UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 100618 0.74 0.37768
Target:  5'- gGAGGUagguguGUCCGGCGAucccGGCcuGCCGCCg -3'
miRNA:   3'- aUUCCGg-----UAGGUCGCU----UCGu-CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.