miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 122787 0.72 0.475404
Target:  5'- gGGGGCCAggaauUCCAGCuuGGCcguguGGUCGCCc -3'
miRNA:   3'- aUUCCGGU-----AGGUCGcuUCG-----UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 20718 0.72 0.475404
Target:  5'- -uGGGCCcgCCGGgGggGCggggGGCCGgCg -3'
miRNA:   3'- auUCCGGuaGGUCgCuuCG----UCGGCgG- -5'
5571 3' -57.6 NC_001806.1 + 56829 0.72 0.484915
Target:  5'- -cGGGCCcgCCAacaccgccGCGGccagGGCGGCCGCg -3'
miRNA:   3'- auUCCGGuaGGU--------CGCU----UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 22425 0.72 0.491625
Target:  5'- --cGGCCGcUUCGGCuGGggccuggcgcacgcGGCGGCCGCCg -3'
miRNA:   3'- auuCCGGU-AGGUCG-CU--------------UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 136969 0.72 0.492588
Target:  5'- gGGGGCCcgCgAGCGuggugcggucauGGCGGCgGCCg -3'
miRNA:   3'- aUUCCGGuaGgUCGCu-----------UCGUCGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 79725 0.72 0.494515
Target:  5'- -cAGGCU-UCC-GCGAccacccaggguuGGCGGCCGCCu -3'
miRNA:   3'- auUCCGGuAGGuCGCU------------UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 51789 0.72 0.494515
Target:  5'- cGGGGCCGUggCGGCcAAGUAcGCCGCCa -3'
miRNA:   3'- aUUCCGGUAg-GUCGcUUCGU-CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 33762 0.72 0.494515
Target:  5'- --cGGCgGcUgCGGCGGcugcGGCGGCCGCCg -3'
miRNA:   3'- auuCCGgU-AgGUCGCU----UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 136707 0.71 0.504201
Target:  5'- -cGGGCCG-CCAcGUGGccgAGCAGuCCGCCu -3'
miRNA:   3'- auUCCGGUaGGU-CGCU---UCGUC-GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 68327 0.71 0.511029
Target:  5'- --cGGCCAUcgccCCGGCaGAcgcgcgggacugcuGGCGGCCGCUg -3'
miRNA:   3'- auuCCGGUA----GGUCG-CU--------------UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 3006 0.71 0.517896
Target:  5'- --cGGCCG-CCAGCGcgucGGCggcguccggugcgcuGGCCGCCg -3'
miRNA:   3'- auuCCGGUaGGUCGCu---UCG---------------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 29454 0.71 0.523811
Target:  5'- gGAGGCCGUCagGGCG-GGCAcgGCCGUg -3'
miRNA:   3'- aUUCCGGUAGg-UCGCuUCGU--CGGCGg -5'
5571 3' -57.6 NC_001806.1 + 112129 0.71 0.523811
Target:  5'- -cAGGCCGUCCucggggcguuugAGCGcGGCAcgGCCGaCCa -3'
miRNA:   3'- auUCCGGUAGG------------UCGCuUCGU--CGGC-GG- -5'
5571 3' -57.6 NC_001806.1 + 134341 0.71 0.533725
Target:  5'- -cGGGCCAUguaCCAGUGggGCAggacgaacucGUCGUCg -3'
miRNA:   3'- auUCCGGUA---GGUCGCuuCGU----------CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 118714 0.71 0.543706
Target:  5'- --uGGUucacgucaucaUAUCCAGCGAgugccuGGCGGCCGCg -3'
miRNA:   3'- auuCCG-----------GUAGGUCGCU------UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 120118 0.71 0.553747
Target:  5'- -cAGGCCAUCCGggccGCGcuucaGGGCGGcCCGCg -3'
miRNA:   3'- auUCCGGUAGGU----CGC-----UUCGUC-GGCGg -5'
5571 3' -57.6 NC_001806.1 + 2029 0.7 0.563842
Target:  5'- -cGGGCCcgUCGGCGGGcCAGUCGCa -3'
miRNA:   3'- auUCCGGuaGGUCGCUUcGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 150093 0.7 0.563842
Target:  5'- gGAGGCaggcCCAccGCGggGCGGCC-CCg -3'
miRNA:   3'- aUUCCGgua-GGU--CGCuuCGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 58928 0.7 0.563842
Target:  5'- gAAGGCuCGUgCgCAGCGggGCAaaCGCCu -3'
miRNA:   3'- aUUCCG-GUA-G-GUCGCuuCGUcgGCGG- -5'
5571 3' -57.6 NC_001806.1 + 23221 0.7 0.564854
Target:  5'- --cGGCCAgcgcaccggacgccgCCGacGCGcuGGCGGCCGCCg -3'
miRNA:   3'- auuCCGGUa--------------GGU--CGCu-UCGUCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.