miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 2132 0.73 0.411652
Target:  5'- gAAGGCCAggUCCcGCGuggacagcAGCAGCaCGCCc -3'
miRNA:   3'- aUUCCGGU--AGGuCGCu-------UCGUCG-GCGG- -5'
5571 3' -57.6 NC_001806.1 + 22167 0.73 0.420436
Target:  5'- cGAGGCC-UCgGGCGccccGGCGGCCGUg -3'
miRNA:   3'- aUUCCGGuAGgUCGCu---UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 30915 0.73 0.420436
Target:  5'- cGGGGCCGUCCccGCG-GGCGGCCuaCg -3'
miRNA:   3'- aUUCCGGUAGGu-CGCuUCGUCGGcgG- -5'
5571 3' -57.6 NC_001806.1 + 109519 0.73 0.420436
Target:  5'- cAGGGCC-UCCAGCGAgcucGGgAGCCGg- -3'
miRNA:   3'- aUUCCGGuAGGUCGCU----UCgUCGGCgg -5'
5571 3' -57.6 NC_001806.1 + 21764 0.73 0.429332
Target:  5'- -cGGGCCGUCgGGCGggGU--CCGUCg -3'
miRNA:   3'- auUCCGGUAGgUCGCuuCGucGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 151282 0.73 0.429332
Target:  5'- gGGGGCCGgggCCGG-GggGCGGCgGCg -3'
miRNA:   3'- aUUCCGGUa--GGUCgCuuCGUCGgCGg -5'
5571 3' -57.6 NC_001806.1 + 23566 0.73 0.429332
Target:  5'- cGGGGCCcagCCacacGGCGGcgcccGCGGCCGCCg -3'
miRNA:   3'- aUUCCGGua-GG----UCGCUu----CGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 3365 0.73 0.438338
Target:  5'- -cGGGCCccggCCAGCcccGGGaCGGCCGCCa -3'
miRNA:   3'- auUCCGGua--GGUCGc--UUC-GUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 147035 0.73 0.438338
Target:  5'- gUGAGGCCG-CCcGCGggGaCGGCC-CCg -3'
miRNA:   3'- -AUUCCGGUaGGuCGCuuC-GUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 30284 0.72 0.447452
Target:  5'- --cGGCCc-CCggGGCGGAGcCGGCCGCCc -3'
miRNA:   3'- auuCCGGuaGG--UCGCUUC-GUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 136544 0.72 0.456669
Target:  5'- -cGGGCCGcCCGGCGcaAAGCAGgCGaCCa -3'
miRNA:   3'- auUCCGGUaGGUCGC--UUCGUCgGC-GG- -5'
5571 3' -57.6 NC_001806.1 + 24512 0.72 0.456669
Target:  5'- -cGGGCCGUgcugCCGGCGcuggacggccGGGCGGCgGCCu -3'
miRNA:   3'- auUCCGGUA----GGUCGC----------UUCGUCGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 3547 0.72 0.456669
Target:  5'- gGAGGCgGgCgCGGCGGA-CAGCCGCCc -3'
miRNA:   3'- aUUCCGgUaG-GUCGCUUcGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 16475 0.72 0.456669
Target:  5'- --uGGCCAuggUCgAGgGggGCuuGCCGCCg -3'
miRNA:   3'- auuCCGGU---AGgUCgCuuCGu-CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 3991 0.72 0.456669
Target:  5'- -cAGGCCuccgcGUCCGGgGuguacAGCAGCCGCg -3'
miRNA:   3'- auUCCGG-----UAGGUCgCu----UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 21388 0.72 0.463182
Target:  5'- gGAGGCCGUCCGGacgaucccgacgccCGAccccGCGGCCucGCCg -3'
miRNA:   3'- aUUCCGGUAGGUC--------------GCUu---CGUCGG--CGG- -5'
5571 3' -57.6 NC_001806.1 + 37321 0.72 0.465988
Target:  5'- cGAGGUUAUCCAGCa---CAGCCGCg -3'
miRNA:   3'- aUUCCGGUAGGUCGcuucGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 112590 0.72 0.465988
Target:  5'- cAAGGCCGU---GCGAAGUcuggacgacgugGGCCGCCa -3'
miRNA:   3'- aUUCCGGUAgguCGCUUCG------------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 122787 0.72 0.475404
Target:  5'- gGGGGCCAggaauUCCAGCuuGGCcguguGGUCGCCc -3'
miRNA:   3'- aUUCCGGU-----AGGUCGcuUCG-----UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 32967 0.72 0.475404
Target:  5'- cGGGGCCccuuggGUCCGcCGggGCcccgggccgGGCCGCCa -3'
miRNA:   3'- aUUCCGG------UAGGUcGCuuCG---------UCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.