miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 3776 0.74 0.369487
Target:  5'- --cGGUCGUaUCGGCGGcucauggccacGGCGGCCGCCg -3'
miRNA:   3'- auuCCGGUA-GGUCGCU-----------UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 3820 0.78 0.21528
Target:  5'- -cAGGCC--CCAGcCGAAGCGGCCgGCCg -3'
miRNA:   3'- auUCCGGuaGGUC-GCUUCGUCGG-CGG- -5'
5571 3' -57.6 NC_001806.1 + 3991 0.72 0.456669
Target:  5'- -cAGGCCuccgcGUCCGGgGuguacAGCAGCCGCg -3'
miRNA:   3'- auUCCGG-----UAGGUCgCu----UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 4089 0.68 0.71696
Target:  5'- cGAGGCCucgaaCCGGCGucGCGccuccuCCGCCu -3'
miRNA:   3'- aUUCCGGua---GGUCGCuuCGUc-----GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 4288 0.69 0.614906
Target:  5'- cGGGGCUGcCCGGCcguGAAGCGGCCcguggcgucgcgGCCg -3'
miRNA:   3'- aUUCCGGUaGGUCG---CUUCGUCGG------------CGG- -5'
5571 3' -57.6 NC_001806.1 + 4593 0.67 0.764848
Target:  5'- cGAGGaCCcggaGUCCGaCGAGGUcgaugacgccgauGGCCGCCa -3'
miRNA:   3'- aUUCC-GG----UAGGUcGCUUCG-------------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 4666 0.66 0.802768
Target:  5'- -uGGGCCGgcgggCgCGGCGAcaGGCGGuCCGUg -3'
miRNA:   3'- auUCCGGUa----G-GUCGCU--UCGUC-GGCGg -5'
5571 3' -57.6 NC_001806.1 + 4749 0.7 0.604638
Target:  5'- cGGGGCCcggucgCCGGCGgcGuCGGCUGCg -3'
miRNA:   3'- aUUCCGGua----GGUCGCuuC-GUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 5487 0.69 0.666287
Target:  5'- aGGGGCCggCgGGaaggaGGAGCagcggaGGCCGCCg -3'
miRNA:   3'- aUUCCGGuaGgUCg----CUUCG------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 5933 0.68 0.723934
Target:  5'- --uGGCCggCgGGCGGgaccgccccaagggGGCggGGCCGCCg -3'
miRNA:   3'- auuCCGGuaGgUCGCU--------------UCG--UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 8662 0.69 0.635475
Target:  5'- --cGGUCuUUUAGCGGAGCAGCCacaucaggagcGCCc -3'
miRNA:   3'- auuCCGGuAGGUCGCUUCGUCGG-----------CGG- -5'
5571 3' -57.6 NC_001806.1 + 16305 0.69 0.666287
Target:  5'- -cGGGUgGUCCAGuCGccucAGCAGUCGCg -3'
miRNA:   3'- auUCCGgUAGGUC-GCu---UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 16475 0.72 0.456669
Target:  5'- --uGGCCAuggUCgAGgGggGCuuGCCGCCg -3'
miRNA:   3'- auuCCGGU---AGgUCgCuuCGu-CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 18368 0.66 0.815146
Target:  5'- aUAGGGgCAggCGGUGGagaagcgcauuuuccGGCAGCCGUCc -3'
miRNA:   3'- -AUUCCgGUagGUCGCU---------------UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 19033 0.67 0.775244
Target:  5'- gGGGGuCCAUCguGCGcuGCu-CCGCCu -3'
miRNA:   3'- aUUCC-GGUAGguCGCuuCGucGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 20718 0.72 0.475404
Target:  5'- -uGGGCCcgCCGGgGggGCggggGGCCGgCg -3'
miRNA:   3'- auUCCGGuaGGUCgCuuCG----UCGGCgG- -5'
5571 3' -57.6 NC_001806.1 + 21388 0.72 0.463182
Target:  5'- gGAGGCCGUCCGGacgaucccgacgccCGAccccGCGGCCucGCCg -3'
miRNA:   3'- aUUCCGGUAGGUC--------------GCUu---CGUCGG--CGG- -5'
5571 3' -57.6 NC_001806.1 + 21587 0.66 0.793738
Target:  5'- ---cGCCcgCCGGCc---CAGCCGCCg -3'
miRNA:   3'- auucCGGuaGGUCGcuucGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 21764 0.73 0.429332
Target:  5'- -cGGGCCGUCgGGCGggGU--CCGUCg -3'
miRNA:   3'- auUCCGGUAGgUCGCuuCGucGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 21917 0.7 0.604638
Target:  5'- -cGGGCCcgCgCGGCGGuGGcCGGCCGCg -3'
miRNA:   3'- auUCCGGuaG-GUCGCU-UC-GUCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.