miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 140538 0.67 0.746558
Target:  5'- cGGGGa----CGGCGggGCagAGCCGCCc -3'
miRNA:   3'- aUUCCgguagGUCGCuuCG--UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 137685 0.7 0.59439
Target:  5'- --cGGCCAcCCA-CGggGC-GCUGCCg -3'
miRNA:   3'- auuCCGGUaGGUcGCuuCGuCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 136969 0.72 0.492588
Target:  5'- gGGGGCCcgCgAGCGuggugcggucauGGCGGCgGCCg -3'
miRNA:   3'- aUUCCGGuaGgUCGCu-----------UCGUCGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 136707 0.71 0.504201
Target:  5'- -cGGGCCG-CCAcGUGGccgAGCAGuCCGCCu -3'
miRNA:   3'- auUCCGGUaGGU-CGCU---UCGUC-GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 136662 0.66 0.811642
Target:  5'- -cGGGCguUCCuguaccGGCGAAcCAGCCGUUg -3'
miRNA:   3'- auUCCGguAGG------UCGCUUcGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 136544 0.72 0.456669
Target:  5'- -cGGGCCGcCCGGCGcaAAGCAGgCGaCCa -3'
miRNA:   3'- auUCCGGUaGGUCGC--UUCGUCgGC-GG- -5'
5571 3' -57.6 NC_001806.1 + 136340 0.69 0.666287
Target:  5'- gAAGGCCAgcgCCAGCucaaaaaacccGggGCcGGCgCGCUc -3'
miRNA:   3'- aUUCCGGUa--GGUCG-----------CuuCG-UCG-GCGG- -5'
5571 3' -57.6 NC_001806.1 + 135767 0.67 0.756234
Target:  5'- gAAGGCCu---GGCGAAGCuGCggCGCCc -3'
miRNA:   3'- aUUCCGGuaggUCGCUUCGuCG--GCGG- -5'
5571 3' -57.6 NC_001806.1 + 135531 0.68 0.706935
Target:  5'- -cAGGUCcgCCcccGCaGGGCGGCUGCCg -3'
miRNA:   3'- auUCCGGuaGGu--CGcUUCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 134865 0.69 0.622102
Target:  5'- -cAGGCCA---GGCGGAGCAGCgucugcuggcuaauCGCCu -3'
miRNA:   3'- auUCCGGUaggUCGCUUCGUCG--------------GCGG- -5'
5571 3' -57.6 NC_001806.1 + 134341 0.71 0.533725
Target:  5'- -cGGGCCAUguaCCAGUGggGCAggacgaacucGUCGUCg -3'
miRNA:   3'- auUCCGGUA---GGUCGCuuCGU----------CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 134227 0.66 0.820351
Target:  5'- -uAGGCCAcgcagUCgGaGCGggGgGGCgGCCc -3'
miRNA:   3'- auUCCGGU-----AGgU-CGCuuCgUCGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 133237 0.67 0.746558
Target:  5'- -cGGGCCAUCgAGaCGGccguGGgAGCCGUg -3'
miRNA:   3'- auUCCGGUAGgUC-GCU----UCgUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 133069 0.67 0.765799
Target:  5'- --cGGCagcUCCugGGUGggGUaauGGCCGCCg -3'
miRNA:   3'- auuCCGgu-AGG--UCGCuuCG---UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 131867 0.69 0.625188
Target:  5'- -cAGGCCGUC--GU--GGCGGCCGCCc -3'
miRNA:   3'- auUCCGGUAGguCGcuUCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 131455 0.66 0.801872
Target:  5'- --uGGUCGUCCgcggaccGGCGgcGCuGuuGCCg -3'
miRNA:   3'- auuCCGGUAGG-------UCGCuuCGuCggCGG- -5'
5571 3' -57.6 NC_001806.1 + 127897 0.66 0.828888
Target:  5'- -uAGGCgCggGUgCAGCGGAGCacGGCCauGCCg -3'
miRNA:   3'- auUCCG-G--UAgGUCGCUUCG--UCGG--CGG- -5'
5571 3' -57.6 NC_001806.1 + 126989 1.1 0.001451
Target:  5'- aUAAGGCCAUCCAGCGAAGCAGCCGCCu -3'
miRNA:   3'- -AUUCCGGUAGGUCGCUUCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 126547 0.68 0.726912
Target:  5'- aGAGGCCcacgccUCgGGCGAaaaaaGGCGGugcuCCGCCg -3'
miRNA:   3'- aUUCCGGu-----AGgUCGCU-----UCGUC----GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 125939 0.67 0.736781
Target:  5'- -uGGGCCcugcUCCGGCGggGCcucacGaCCGCa -3'
miRNA:   3'- auUCCGGu---AGGUCGCuuCGu----C-GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.