miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 151432 0.76 0.300645
Target:  5'- gGGGGCCcaCCGGCGGggggcggcggcggGGCGGCCGCg -3'
miRNA:   3'- aUUCCGGuaGGUCGCU-------------UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 151340 0.67 0.756234
Target:  5'- gGGGGCUGUCCGGC----CAGUCGUCg -3'
miRNA:   3'- aUUCCGGUAGGUCGcuucGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 151282 0.73 0.429332
Target:  5'- gGGGGCCGgggCCGG-GggGCGGCgGCg -3'
miRNA:   3'- aUUCCGGUa--GGUCgCuuCGUCGgCGg -5'
5571 3' -57.6 NC_001806.1 + 150698 0.7 0.604638
Target:  5'- --uGGCCAgUCCcGCccccGAGGCGGCCcGCCc -3'
miRNA:   3'- auuCCGGU-AGGuCG----CUUCGUCGG-CGG- -5'
5571 3' -57.6 NC_001806.1 + 150670 0.75 0.345647
Target:  5'- -cGGGCCccgCC-GCGcuGGCGGCCGCCg -3'
miRNA:   3'- auUCCGGua-GGuCGCu-UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 150093 0.7 0.563842
Target:  5'- gGAGGCaggcCCAccGCGggGCGGCC-CCg -3'
miRNA:   3'- aUUCCGgua-GGU--CGCuuCGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 148192 0.67 0.765799
Target:  5'- -cGGGgCGUCCGGCGGggGGCGGgCGgUa -3'
miRNA:   3'- auUCCgGUAGGUCGCU--UCGUCgGCgG- -5'
5571 3' -57.6 NC_001806.1 + 147983 0.67 0.78456
Target:  5'- aGGGGCCAgacgCCccccgcGGCGccGCGGCuCGCg -3'
miRNA:   3'- aUUCCGGUa---GG------UCGCuuCGUCG-GCGg -5'
5571 3' -57.6 NC_001806.1 + 147911 0.74 0.353469
Target:  5'- gGGGGcCCGUCCGGCcccuCGGCCGCCc -3'
miRNA:   3'- aUUCC-GGUAGGUCGcuucGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 147637 0.68 0.696846
Target:  5'- cUGGGGCacacggcgcgCGUCC-GCGggGCGgGCgGCCg -3'
miRNA:   3'- -AUUCCG----------GUAGGuCGCuuCGU-CGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 147207 0.66 0.792827
Target:  5'- --cGGCC--CCGGCGGcggaagaGGCGGCCcCCg -3'
miRNA:   3'- auuCCGGuaGGUCGCU-------UCGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 147035 0.73 0.438338
Target:  5'- gUGAGGCCG-CCcGCGggGaCGGCC-CCg -3'
miRNA:   3'- -AUUCCGGUaGGuCGCuuC-GUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 146749 0.7 0.601561
Target:  5'- gGGGGUCAUCCAGaggcuguuccacucCGAcgcGGgGGCCGUCg -3'
miRNA:   3'- aUUCCGGUAGGUC--------------GCU---UCgUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 146074 0.7 0.604638
Target:  5'- aGAGGCCAggucagUCCgGGCG-GGCAGgCGCUc -3'
miRNA:   3'- aUUCCGGU------AGG-UCGCuUCGUCgGCGG- -5'
5571 3' -57.6 NC_001806.1 + 144188 0.73 0.394429
Target:  5'- --cGGCCGcCgCAGcCGccGCAGCCGCCg -3'
miRNA:   3'- auuCCGGUaG-GUC-GCuuCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 143621 0.75 0.330376
Target:  5'- gGGGGCCGuuaucUCCAGCGccccguccGGCGcGCCGCCc -3'
miRNA:   3'- aUUCCGGU-----AGGUCGCu-------UCGU-CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 143371 0.66 0.820351
Target:  5'- gGGGGCCGgcagaccgaCGGCGAcaacgcuccccGGCGGCCGg- -3'
miRNA:   3'- aUUCCGGUag-------GUCGCU-----------UCGUCGGCgg -5'
5571 3' -57.6 NC_001806.1 + 141837 0.69 0.666287
Target:  5'- aGGGGUUcgCCAGCucAGGCuccaucaggGGCCGCCa -3'
miRNA:   3'- aUUCCGGuaGGUCGc-UUCG---------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 141436 0.66 0.811642
Target:  5'- --cGGCCAaCCGGCGGAuaAcuCCGCCc -3'
miRNA:   3'- auuCCGGUaGGUCGCUUcgUc-GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 140883 0.68 0.706935
Target:  5'- gUAGGGCCcgUCGGUacaGGGCGGgCCGUCa -3'
miRNA:   3'- -AUUCCGGuaGGUCGc--UUCGUC-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.