miRNA display CGI


Results 1 - 20 of 210 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 1418 0.69 0.656033
Target:  5'- --uGGCCGaggcCCAGCGAaucccgGGCGG-CGCCg -3'
miRNA:   3'- auuCCGGUa---GGUCGCU------UCGUCgGCGG- -5'
5571 3' -57.6 NC_001806.1 + 1561 0.7 0.58417
Target:  5'- -cGGGCCGggCCGGCGc-GCA-CCGCCu -3'
miRNA:   3'- auUCCGGUa-GGUCGCuuCGUcGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 1703 0.67 0.736781
Target:  5'- --cGGUgGUCCc-CGAGGCcGCCGCCn -3'
miRNA:   3'- auuCCGgUAGGucGCUUCGuCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 1726 0.8 0.159131
Target:  5'- --cGGCCGUCCAGCGccGGCAGCacgGCCc -3'
miRNA:   3'- auuCCGGUAGGUCGCu-UCGUCGg--CGG- -5'
5571 3' -57.6 NC_001806.1 + 1923 0.75 0.345647
Target:  5'- cGAGGCCAgcaCCGuGCGgcGCAggucccgcGCCGCCg -3'
miRNA:   3'- aUUCCGGUa--GGU-CGCuuCGU--------CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 1959 0.66 0.812521
Target:  5'- --cGGCCAgcgcacggcgcacugCaCGGCGGgcAGCAGCUGCa -3'
miRNA:   3'- auuCCGGUa--------------G-GUCGCU--UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 2029 0.7 0.563842
Target:  5'- -cGGGCCcgUCGGCGGGcCAGUCGCa -3'
miRNA:   3'- auUCCGGuaGGUCGCUUcGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 2085 0.68 0.676513
Target:  5'- --cGGUCG-CCGGCGcuggcGAGCAGCC-CCa -3'
miRNA:   3'- auuCCGGUaGGUCGC-----UUCGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 2132 0.73 0.411652
Target:  5'- gAAGGCCAggUCCcGCGuggacagcAGCAGCaCGCCc -3'
miRNA:   3'- aUUCCGGU--AGGuCGCu-------UCGUCG-GCGG- -5'
5571 3' -57.6 NC_001806.1 + 2252 0.74 0.361416
Target:  5'- cAGGGCCG-CCAGC-AGGCAGgacagcCCGCCg -3'
miRNA:   3'- aUUCCGGUaGGUCGcUUCGUC------GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 2290 0.68 0.696846
Target:  5'- --cGGaCCAcUCCGGCGGcccccccgaGGCcccGCCGCCg -3'
miRNA:   3'- auuCC-GGU-AGGUCGCU---------UCGu--CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 2403 0.69 0.645759
Target:  5'- -cAGGCCG-CCAuGCGgcGCAGCgGgCCc -3'
miRNA:   3'- auUCCGGUaGGU-CGCuuCGUCGgC-GG- -5'
5571 3' -57.6 NC_001806.1 + 2440 0.67 0.78456
Target:  5'- gGGGGCCAaagaGGCGGcccccGGCGGCC-CCg -3'
miRNA:   3'- aUUCCGGUagg-UCGCU-----UCGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 2555 0.7 0.573985
Target:  5'- cGAGGCCAgggCCcGCGGgucaaacaugagGGcCGGUCGCCa -3'
miRNA:   3'- aUUCCGGUa--GGuCGCU------------UC-GUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 2652 0.77 0.237475
Target:  5'- -uAGGCC-UCCAGgGcGGCGGCCGCg -3'
miRNA:   3'- auUCCGGuAGGUCgCuUCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 3006 0.71 0.517896
Target:  5'- --cGGCCG-CCAGCGcgucGGCggcguccggugcgcuGGCCGCCg -3'
miRNA:   3'- auuCCGGUaGGUCGCu---UCG---------------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 3085 0.66 0.802768
Target:  5'- -cAGGUCcg-CGGCGGcGGCGGCCGCg -3'
miRNA:   3'- auUCCGGuagGUCGCU-UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 3183 0.68 0.706935
Target:  5'- --cGGCCA--CGGCGGccucGCuGCCGCCg -3'
miRNA:   3'- auuCCGGUagGUCGCUu---CGuCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 3365 0.73 0.438338
Target:  5'- -cGGGCCccggCCAGCcccGGGaCGGCCGCCa -3'
miRNA:   3'- auUCCGGua--GGUCGc--UUC-GUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 3547 0.72 0.456669
Target:  5'- gGAGGCgGgCgCGGCGGA-CAGCCGCCc -3'
miRNA:   3'- aUUCCGgUaG-GUCGCUUcGUCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.