miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 30014 0.66 0.828888
Target:  5'- uUGGGGUUGUUgaagcggaGGCGggGCGGCCgagggGCCg -3'
miRNA:   3'- -AUUCCGGUAGg-------UCGCuuCGUCGG-----CGG- -5'
5571 3' -57.6 NC_001806.1 + 136662 0.66 0.811642
Target:  5'- -cGGGCguUCCuguaccGGCGAAcCAGCCGUUg -3'
miRNA:   3'- auUCCGguAGG------UCGCUUcGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 96128 0.66 0.802768
Target:  5'- ---cGCCGcCCGGacu-GCAGCCGCCc -3'
miRNA:   3'- auucCGGUaGGUCgcuuCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 34762 0.66 0.820351
Target:  5'- gGGGGCaaagCCGGCGggGCGGuUCGg- -3'
miRNA:   3'- aUUCCGgua-GGUCGCuuCGUC-GGCgg -5'
5571 3' -57.6 NC_001806.1 + 50514 0.66 0.793738
Target:  5'- gGGGGCCGagCacgaggcgcugGGCGAcaccGCAGCgCGCCg -3'
miRNA:   3'- aUUCCGGUagG-----------UCGCUu---CGUCG-GCGG- -5'
5571 3' -57.6 NC_001806.1 + 22900 0.66 0.793738
Target:  5'- --cGGCCcgCCAGCcccccGCGGCCGg- -3'
miRNA:   3'- auuCCGGuaGGUCGcuu--CGUCGGCgg -5'
5571 3' -57.6 NC_001806.1 + 22569 0.66 0.794648
Target:  5'- gGGGGCCGcggggagccccggcgCCGGCGcagaugacgaggGGGUcGCCGCCg -3'
miRNA:   3'- aUUCCGGUa--------------GGUCGC------------UUCGuCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 96739 0.66 0.811642
Target:  5'- --cGGUgGUgCAGUucGAGCAGCCGCg -3'
miRNA:   3'- auuCCGgUAgGUCGc-UUCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 112752 0.66 0.793738
Target:  5'- gGAGGCC--CUGGaGAAGCGcaucucGCCGCCa -3'
miRNA:   3'- aUUCCGGuaGGUCgCUUCGU------CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 47995 0.66 0.793738
Target:  5'- cGAGGCCcgCCGGCu--GCGGgaGCUa -3'
miRNA:   3'- aUUCCGGuaGGUCGcuuCGUCggCGG- -5'
5571 3' -57.6 NC_001806.1 + 70839 0.66 0.793738
Target:  5'- --cGGCCugcuaucaagCC-GCGgcGCGGCCGCg -3'
miRNA:   3'- auuCCGGua--------GGuCGCuuCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 65313 0.66 0.793738
Target:  5'- aAGGGCC--UCGGUGggGacguCGGCCGUCu -3'
miRNA:   3'- aUUCCGGuaGGUCGCuuC----GUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 3085 0.66 0.802768
Target:  5'- -cAGGUCcg-CGGCGGcGGCGGCCGCg -3'
miRNA:   3'- auUCCGGuagGUCGCU-UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 127897 0.66 0.828888
Target:  5'- -uAGGCgCggGUgCAGCGGAGCacGGCCauGCCg -3'
miRNA:   3'- auUCCG-G--UAgGUCGCUUCG--UCGG--CGG- -5'
5571 3' -57.6 NC_001806.1 + 118185 0.66 0.793738
Target:  5'- --cGGCgGUCCGGCGAA----CCGCCc -3'
miRNA:   3'- auuCCGgUAGGUCGCUUcgucGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 72675 0.66 0.819488
Target:  5'- aGAGGCCAagcgcccgaaUCgGGCGcccgacgauguauGGGCGGUgGCCc -3'
miRNA:   3'- aUUCCGGU----------AGgUCGC-------------UUCGUCGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 122856 0.66 0.793738
Target:  5'- -cAGGCUAUUaaac--AGCAGCCGCCg -3'
miRNA:   3'- auUCCGGUAGgucgcuUCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 147983 0.67 0.78456
Target:  5'- aGGGGCCAgacgCCccccgcGGCGccGCGGCuCGCg -3'
miRNA:   3'- aUUCCGGUa---GG------UCGCuuCGUCG-GCGg -5'
5571 3' -57.6 NC_001806.1 + 69593 0.67 0.78456
Target:  5'- -cGGGCgGcUCuGCGAGGCGGUCgGCCu -3'
miRNA:   3'- auUCCGgUaGGuCGCUUCGUCGG-CGG- -5'
5571 3' -57.6 NC_001806.1 + 102162 0.67 0.78456
Target:  5'- ---uGCCGUUC-GCGAGG-AGCCGCUg -3'
miRNA:   3'- auucCGGUAGGuCGCUUCgUCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.