miRNA display CGI


Results 41 - 60 of 210 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 3' -57.6 NC_001806.1 + 30284 0.72 0.447452
Target:  5'- --cGGCCc-CCggGGCGGAGcCGGCCGCCc -3'
miRNA:   3'- auuCCGGuaGG--UCGCUUC-GUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 3991 0.72 0.456669
Target:  5'- -cAGGCCuccgcGUCCGGgGuguacAGCAGCCGCg -3'
miRNA:   3'- auUCCGG-----UAGGUCgCu----UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 16475 0.72 0.456669
Target:  5'- --uGGCCAuggUCgAGgGggGCuuGCCGCCg -3'
miRNA:   3'- auuCCGGU---AGgUCgCuuCGu-CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 3547 0.72 0.456669
Target:  5'- gGAGGCgGgCgCGGCGGA-CAGCCGCCc -3'
miRNA:   3'- aUUCCGgUaG-GUCGCUUcGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 24512 0.72 0.456669
Target:  5'- -cGGGCCGUgcugCCGGCGcuggacggccGGGCGGCgGCCu -3'
miRNA:   3'- auUCCGGUA----GGUCGC----------UUCGUCGgCGG- -5'
5571 3' -57.6 NC_001806.1 + 136544 0.72 0.456669
Target:  5'- -cGGGCCGcCCGGCGcaAAGCAGgCGaCCa -3'
miRNA:   3'- auUCCGGUaGGUCGC--UUCGUCgGC-GG- -5'
5571 3' -57.6 NC_001806.1 + 21388 0.72 0.463182
Target:  5'- gGAGGCCGUCCGGacgaucccgacgccCGAccccGCGGCCucGCCg -3'
miRNA:   3'- aUUCCGGUAGGUC--------------GCUu---CGUCGG--CGG- -5'
5571 3' -57.6 NC_001806.1 + 37321 0.72 0.465988
Target:  5'- cGAGGUUAUCCAGCa---CAGCCGCg -3'
miRNA:   3'- aUUCCGGUAGGUCGcuucGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 120118 0.71 0.553747
Target:  5'- -cAGGCCAUCCGggccGCGcuucaGGGCGGcCCGCg -3'
miRNA:   3'- auUCCGGUAGGU----CGC-----UUCGUC-GGCGg -5'
5571 3' -57.6 NC_001806.1 + 118714 0.71 0.543706
Target:  5'- --uGGUucacgucaucaUAUCCAGCGAgugccuGGCGGCCGCg -3'
miRNA:   3'- auuCCG-----------GUAGGUCGCU------UCGUCGGCGg -5'
5571 3' -57.6 NC_001806.1 + 134341 0.71 0.533725
Target:  5'- -cGGGCCAUguaCCAGUGggGCAggacgaacucGUCGUCg -3'
miRNA:   3'- auUCCGGUA---GGUCGCuuCGU----------CGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 112129 0.71 0.523811
Target:  5'- -cAGGCCGUCCucggggcguuugAGCGcGGCAcgGCCGaCCa -3'
miRNA:   3'- auUCCGGUAGG------------UCGCuUCGU--CGGC-GG- -5'
5571 3' -57.6 NC_001806.1 + 29454 0.71 0.523811
Target:  5'- gGAGGCCGUCagGGCG-GGCAcgGCCGUg -3'
miRNA:   3'- aUUCCGGUAGg-UCGCuUCGU--CGGCGg -5'
5571 3' -57.6 NC_001806.1 + 3006 0.71 0.517896
Target:  5'- --cGGCCG-CCAGCGcgucGGCggcguccggugcgcuGGCCGCCg -3'
miRNA:   3'- auuCCGGUaGGUCGCu---UCG---------------UCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 68327 0.71 0.511029
Target:  5'- --cGGCCAUcgccCCGGCaGAcgcgcgggacugcuGGCGGCCGCUg -3'
miRNA:   3'- auuCCGGUA----GGUCG-CU--------------UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 136707 0.71 0.504201
Target:  5'- -cGGGCCG-CCAcGUGGccgAGCAGuCCGCCu -3'
miRNA:   3'- auUCCGGUaGGU-CGCU---UCGUC-GGCGG- -5'
5571 3' -57.6 NC_001806.1 + 150093 0.7 0.563842
Target:  5'- gGAGGCaggcCCAccGCGggGCGGCC-CCg -3'
miRNA:   3'- aUUCCGgua-GGU--CGCuuCGUCGGcGG- -5'
5571 3' -57.6 NC_001806.1 + 58928 0.7 0.563842
Target:  5'- gAAGGCuCGUgCgCAGCGggGCAaaCGCCu -3'
miRNA:   3'- aUUCCG-GUA-G-GUCGCuuCGUcgGCGG- -5'
5571 3' -57.6 NC_001806.1 + 23221 0.7 0.564854
Target:  5'- --cGGCCAgcgcaccggacgccgCCGacGCGcuGGCGGCCGCCg -3'
miRNA:   3'- auuCCGGUa--------------GGU--CGCu-UCGUCGGCGG- -5'
5571 3' -57.6 NC_001806.1 + 62230 0.7 0.572969
Target:  5'- aAGGGCCGUCagAGCGGgggagagGGCuggGGCCGCg -3'
miRNA:   3'- aUUCCGGUAGg-UCGCU-------UCG---UCGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.