miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5572 3' -62.6 NC_001806.1 + 77967 0.67 0.5331
Target:  5'- gGCcC-CGGGGCCGCcgcucGGACCCcagAGCu- -3'
miRNA:   3'- -CGaGaGCCCCGGCGu----CCUGGG---UCGuu -5'
5572 3' -62.6 NC_001806.1 + 77917 0.72 0.287513
Target:  5'- cGCgagUUUGGGuGUCGCuGGGCCCAGCu- -3'
miRNA:   3'- -CGa--GAGCCC-CGGCGuCCUGGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 77051 0.7 0.366273
Target:  5'- -gUgUCGGGGCUGCGa-GCCCAGCGGg -3'
miRNA:   3'- cgAgAGCCCCGGCGUccUGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 72414 0.67 0.500863
Target:  5'- gGCUCUgcaucuuuaCGGGGCCagcgagacuuaccuGCAGGACgaagcguUCAGCGAa -3'
miRNA:   3'- -CGAGA---------GCCCCGG--------------CGUCCUG-------GGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 70855 0.7 0.350904
Target:  5'- cGCgg-CGcGGCCGCGGGACCCgAGCc- -3'
miRNA:   3'- -CGagaGCcCCGGCGUCCUGGG-UCGuu -5'
5572 3' -62.6 NC_001806.1 + 69238 0.7 0.37413
Target:  5'- uGCagCUCGGGGagcagcccuCCGCcGGcGCCCAGCAGc -3'
miRNA:   3'- -CGa-GAGCCCC---------GGCGuCC-UGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 67201 0.66 0.59258
Target:  5'- cGCUCggucugccggccuggCGGGGCgCGCugguGGGCCaggugaGGCAGg -3'
miRNA:   3'- -CGAGa--------------GCCCCG-GCGu---CCUGGg-----UCGUU- -5'
5572 3' -62.6 NC_001806.1 + 59615 0.66 0.58174
Target:  5'- aGCgC-CGGGGCCuuGGGGcCCCGGCc- -3'
miRNA:   3'- -CGaGaGCCCCGGcgUCCU-GGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 54715 0.7 0.366273
Target:  5'- cGCcCUCGGGGaCGCAGccGGCCguGCAGa -3'
miRNA:   3'- -CGaGAGCCCCgGCGUC--CUGGguCGUU- -5'
5572 3' -62.6 NC_001806.1 + 54127 0.69 0.432229
Target:  5'- -gUCcCGGGGCC-CAGGGgCCGGUAGg -3'
miRNA:   3'- cgAGaGCCCCGGcGUCCUgGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 51779 0.66 0.601475
Target:  5'- cGUUCaagagCGGGGCCGUGGcGGCCaAGUAc -3'
miRNA:   3'- -CGAGa----GCCCCGGCGUC-CUGGgUCGUu -5'
5572 3' -62.6 NC_001806.1 + 50399 0.69 0.40668
Target:  5'- gGCUCUCGGuGGUCGUGGGggcGCgCCuGCAc -3'
miRNA:   3'- -CGAGAGCC-CCGGCGUCC---UG-GGuCGUu -5'
5572 3' -62.6 NC_001806.1 + 43699 0.66 0.571921
Target:  5'- cGCcUUCGGGGuuGCcggGGGAaCCCGGUc- -3'
miRNA:   3'- -CGaGAGCCCCggCG---UCCU-GGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 43496 0.67 0.523536
Target:  5'- -aUCgaCGGGGCCGUGGcGGCCCAuCAGg -3'
miRNA:   3'- cgAGa-GCCCCGGCGUC-CUGGGUcGUU- -5'
5572 3' -62.6 NC_001806.1 + 43287 0.66 0.562141
Target:  5'- cGCcCUCGGaggcggagccgcGGCUGCAGGAggcCCUGGCGGu -3'
miRNA:   3'- -CGaGAGCC------------CCGGCGUCCU---GGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 37782 0.66 0.552408
Target:  5'- cGCUC-CGGGGCCggggcGCGGGGgUCcGCGGg -3'
miRNA:   3'- -CGAGaGCCCCGG-----CGUCCUgGGuCGUU- -5'
5572 3' -62.6 NC_001806.1 + 35514 0.68 0.453328
Target:  5'- gGCgUCggagCGGGGCCGCucacgccaagccGCCCAGCGAg -3'
miRNA:   3'- -CG-AGa---GCCCCGGCGucc---------UGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 30791 0.66 0.601475
Target:  5'- cCUCgggCGGGGCCGUcGGuGCCCuGgGAg -3'
miRNA:   3'- cGAGa--GCCCCGGCGuCC-UGGGuCgUU- -5'
5572 3' -62.6 NC_001806.1 + 29138 0.7 0.37413
Target:  5'- cGgUCUCGGGGgggagccccccCCGCgAGGAagacCCCGGCAGu -3'
miRNA:   3'- -CgAGAGCCCC-----------GGCG-UCCU----GGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 29105 0.68 0.45869
Target:  5'- gGCUgcUGGGGCCGCAGGGCgUGGa-- -3'
miRNA:   3'- -CGAgaGCCCCGGCGUCCUGgGUCguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.