miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5572 3' -62.6 NC_001806.1 + 150873 0.66 0.571921
Target:  5'- gGCUC-CGcGGGCC--AGGGCCCGGgCAc -3'
miRNA:   3'- -CGAGaGC-CCCGGcgUCCUGGGUC-GUu -5'
5572 3' -62.6 NC_001806.1 + 148172 0.66 0.600486
Target:  5'- cGC-CUCugcguggGGGGgCGCGGGGCguCCGGCGGg -3'
miRNA:   3'- -CGaGAG-------CCCCgGCGUCCUG--GGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 146823 0.66 0.591593
Target:  5'- cGgUCUCGGGGa-GCAGGGUgCGGCGg -3'
miRNA:   3'- -CgAGAGCCCCggCGUCCUGgGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 146167 0.66 0.580757
Target:  5'- uGCUUUCGGGGaUCGguGGucaggcaGCCCGGg-- -3'
miRNA:   3'- -CGAGAGCCCC-GGCguCC-------UGGGUCguu -5'
5572 3' -62.6 NC_001806.1 + 140284 0.66 0.552408
Target:  5'- aCUUUUGGGGUCcUAGGAuCCCGGCc- -3'
miRNA:   3'- cGAGAGCCCCGGcGUCCU-GGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 138835 0.68 0.476802
Target:  5'- aGCaacUGGGGCCGCgggacgGGGGCCCGGaCGAu -3'
miRNA:   3'- -CGagaGCCCCGGCG------UCCUGGGUC-GUU- -5'
5572 3' -62.6 NC_001806.1 + 136528 0.67 0.504613
Target:  5'- aGCUUgacGGGCCGCucGGGccGCCCGGCGc -3'
miRNA:   3'- -CGAGagcCCCGGCG--UCC--UGGGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 134897 0.67 0.514039
Target:  5'- cGC-CUCGGccgccucgaccaGGCUGCGGucCCCGGCGAu -3'
miRNA:   3'- -CGaGAGCC------------CCGGCGUCcuGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 130838 0.66 0.562141
Target:  5'- gGgaCUCGGcGGCCGgGGGAUCUGGgAGg -3'
miRNA:   3'- -CgaGAGCC-CCGGCgUCCUGGGUCgUU- -5'
5572 3' -62.6 NC_001806.1 + 126888 1.07 0.000848
Target:  5'- gGCUCUCGGGGCCGCAGGACCCAGCAAg -3'
miRNA:   3'- -CGAGAGCCCCGGCGUCCUGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 126113 0.67 0.523536
Target:  5'- cGCUaCUgCGuGGGCCGCGcGGACgaCGGCGg -3'
miRNA:   3'- -CGA-GA-GC-CCCGGCGU-CCUGg-GUCGUu -5'
5572 3' -62.6 NC_001806.1 + 119612 0.67 0.542726
Target:  5'- gGCg---GGGGCCGCuuuguGGcCCCAGCGc -3'
miRNA:   3'- -CGagagCCCCGGCGu----CCuGGGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 107038 0.68 0.48599
Target:  5'- cGCcCgCGGGGCCGCGGG-CUguGCc- -3'
miRNA:   3'- -CGaGaGCCCCGGCGUCCuGGguCGuu -5'
5572 3' -62.6 NC_001806.1 + 106861 0.73 0.244705
Target:  5'- uUUCUCGGGGgaCGCGGGcGCCgAGCAGg -3'
miRNA:   3'- cGAGAGCCCCg-GCGUCC-UGGgUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 104184 0.67 0.523536
Target:  5'- uGCagUCGGGGCgGCGcGGuCCCAGg-- -3'
miRNA:   3'- -CGagAGCCCCGgCGU-CCuGGGUCguu -5'
5572 3' -62.6 NC_001806.1 + 96421 0.66 0.601475
Target:  5'- cGCUCUUGGGGUugaCGCugGGGGuCCUGGUg- -3'
miRNA:   3'- -CGAGAGCCCCG---GCG--UCCU-GGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 92125 0.66 0.595543
Target:  5'- aGCuUCUCGGGcggcgauccaaccucGCCGUguaccAGGACCUGGCc- -3'
miRNA:   3'- -CG-AGAGCCC---------------CGGCG-----UCCUGGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 88088 0.69 0.414246
Target:  5'- aGCUCguucaggugggauUCGGGGagguCGCAGGAaCCgAGCGAa -3'
miRNA:   3'- -CGAG-------------AGCCCCg---GCGUCCU-GGgUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 84459 0.71 0.314515
Target:  5'- aGCcugCUUcGGGCCGCGGGGCCCgaGGCc- -3'
miRNA:   3'- -CGa--GAGcCCCGGCGUCCUGGG--UCGuu -5'
5572 3' -62.6 NC_001806.1 + 83821 0.69 0.382101
Target:  5'- ----gCGGGGUcggCGCGGGAUCCGGCAc -3'
miRNA:   3'- cgagaGCCCCG---GCGUCCUGGGUCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.