Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 51779 | 0.66 | 0.601475 |
Target: 5'- cGUUCaagagCGGGGCCGUGGcGGCCaAGUAc -3' miRNA: 3'- -CGAGa----GCCCCGGCGUC-CUGGgUCGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 29138 | 0.7 | 0.37413 |
Target: 5'- cGgUCUCGGGGgggagccccccCCGCgAGGAagacCCCGGCAGu -3' miRNA: 3'- -CgAGAGCCCC-----------GGCG-UCCU----GGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 69238 | 0.7 | 0.37413 |
Target: 5'- uGCagCUCGGGGagcagcccuCCGCcGGcGCCCAGCAGc -3' miRNA: 3'- -CGa-GAGCCCC---------GGCGuCC-UGGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 83821 | 0.69 | 0.382101 |
Target: 5'- ----gCGGGGUcggCGCGGGAUCCGGCAc -3' miRNA: 3'- cgagaGCCCCG---GCGUCCUGGGUCGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 11872 | 0.69 | 0.382101 |
Target: 5'- cGCUCgcCGGGGCCagacGCGGGGCCgaagacggaAGCAGu -3' miRNA: 3'- -CGAGa-GCCCCGG----CGUCCUGGg--------UCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 50399 | 0.69 | 0.40668 |
Target: 5'- gGCUCUCGGuGGUCGUGGGggcGCgCCuGCAc -3' miRNA: 3'- -CGAGAGCC-CCGGCGUCC---UG-GGuCGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 88088 | 0.69 | 0.414246 |
Target: 5'- aGCUCguucaggugggauUCGGGGagguCGCAGGAaCCgAGCGAa -3' miRNA: 3'- -CGAG-------------AGCCCCg---GCGUCCU-GGgUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 3094 | 0.69 | 0.415092 |
Target: 5'- gGCgg-CGGcGGCCGCGGaGCUCGGCAGg -3' miRNA: 3'- -CGagaGCC-CCGGCGUCcUGGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 3311 | 0.69 | 0.432229 |
Target: 5'- gGCgg-CGGGGaaGCGGGGCCC-GCGGg -3' miRNA: 3'- -CGagaGCCCCggCGUCCUGGGuCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 77051 | 0.7 | 0.366273 |
Target: 5'- -gUgUCGGGGCUGCGa-GCCCAGCGGg -3' miRNA: 3'- cgAgAGCCCCGGCGUccUGGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 54715 | 0.7 | 0.366273 |
Target: 5'- cGCcCUCGGGGaCGCAGccGGCCguGCAGa -3' miRNA: 3'- -CGaGAGCCCCgGCGUC--CUGGguCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 27273 | 0.7 | 0.366273 |
Target: 5'- gGCcaaUCGGcGGCCGCcagcgcggcGGGGCCCGGCc- -3' miRNA: 3'- -CGag-AGCC-CCGGCG---------UCCUGGGUCGuu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 22562 | 0.75 | 0.162552 |
Target: 5'- cGCUgaCgGGGGCCGCGGGGagcCCCGGCGc -3' miRNA: 3'- -CGAgaG-CCCCGGCGUCCU---GGGUCGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 3137 | 0.74 | 0.212347 |
Target: 5'- aGCg--CGGGGCC-CAGGGcCCCGGCGAc -3' miRNA: 3'- -CGagaGCCCCGGcGUCCU-GGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 106861 | 0.73 | 0.244705 |
Target: 5'- uUUCUCGGGGgaCGCGGGcGCCgAGCAGg -3' miRNA: 3'- cGAGAGCCCCg-GCGUCC-UGGgUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 77917 | 0.72 | 0.287513 |
Target: 5'- cGCgagUUUGGGuGUCGCuGGGCCCAGCu- -3' miRNA: 3'- -CGa--GAGCCC-CGGCGuCCUGGGUCGuu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 84459 | 0.71 | 0.314515 |
Target: 5'- aGCcugCUUcGGGCCGCGGGGCCCgaGGCc- -3' miRNA: 3'- -CGa--GAGcCCCGGCGUCCUGGG--UCGuu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 22879 | 0.71 | 0.32872 |
Target: 5'- -gUCcCGGGGCUGgcCGGGGCCCGGCc- -3' miRNA: 3'- cgAGaGCCCCGGC--GUCCUGGGUCGuu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 70855 | 0.7 | 0.350904 |
Target: 5'- cGCgg-CGcGGCCGCGGGACCCgAGCc- -3' miRNA: 3'- -CGagaGCcCCGGCGUCCUGGG-UCGuu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 15853 | 0.7 | 0.358531 |
Target: 5'- cCUUUUGGGGCCGCggGGGGCCgAGa-- -3' miRNA: 3'- cGAGAGCCCCGGCG--UCCUGGgUCguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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