miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5572 3' -62.6 NC_001806.1 + 126888 1.07 0.000848
Target:  5'- gGCUCUCGGGGCCGCAGGACCCAGCAAg -3'
miRNA:   3'- -CGAGAGCCCCGGCGUCCUGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 22562 0.75 0.162552
Target:  5'- cGCUgaCgGGGGCCGCGGGGagcCCCGGCGc -3'
miRNA:   3'- -CGAgaG-CCCCGGCGUCCU---GGGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 3137 0.74 0.212347
Target:  5'- aGCg--CGGGGCC-CAGGGcCCCGGCGAc -3'
miRNA:   3'- -CGagaGCCCCGGcGUCCU-GGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 106861 0.73 0.244705
Target:  5'- uUUCUCGGGGgaCGCGGGcGCCgAGCAGg -3'
miRNA:   3'- cGAGAGCCCCg-GCGUCC-UGGgUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 77917 0.72 0.287513
Target:  5'- cGCgagUUUGGGuGUCGCuGGGCCCAGCu- -3'
miRNA:   3'- -CGa--GAGCCC-CGGCGuCCUGGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 84459 0.71 0.314515
Target:  5'- aGCcugCUUcGGGCCGCGGGGCCCgaGGCc- -3'
miRNA:   3'- -CGa--GAGcCCCGGCGUCCUGGG--UCGuu -5'
5572 3' -62.6 NC_001806.1 + 22879 0.71 0.32872
Target:  5'- -gUCcCGGGGCUGgcCGGGGCCCGGCc- -3'
miRNA:   3'- cgAGaGCCCCGGC--GUCCUGGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 70855 0.7 0.350904
Target:  5'- cGCgg-CGcGGCCGCGGGACCCgAGCc- -3'
miRNA:   3'- -CGagaGCcCCGGCGUCCUGGG-UCGuu -5'
5572 3' -62.6 NC_001806.1 + 15853 0.7 0.358531
Target:  5'- cCUUUUGGGGCCGCggGGGGCCgAGa-- -3'
miRNA:   3'- cGAGAGCCCCGGCG--UCCUGGgUCguu -5'
5572 3' -62.6 NC_001806.1 + 77051 0.7 0.366273
Target:  5'- -gUgUCGGGGCUGCGa-GCCCAGCGGg -3'
miRNA:   3'- cgAgAGCCCCGGCGUccUGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 54715 0.7 0.366273
Target:  5'- cGCcCUCGGGGaCGCAGccGGCCguGCAGa -3'
miRNA:   3'- -CGaGAGCCCCgGCGUC--CUGGguCGUU- -5'
5572 3' -62.6 NC_001806.1 + 27273 0.7 0.366273
Target:  5'- gGCcaaUCGGcGGCCGCcagcgcggcGGGGCCCGGCc- -3'
miRNA:   3'- -CGag-AGCC-CCGGCG---------UCCUGGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 29138 0.7 0.37413
Target:  5'- cGgUCUCGGGGgggagccccccCCGCgAGGAagacCCCGGCAGu -3'
miRNA:   3'- -CgAGAGCCCC-----------GGCG-UCCU----GGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 69238 0.7 0.37413
Target:  5'- uGCagCUCGGGGagcagcccuCCGCcGGcGCCCAGCAGc -3'
miRNA:   3'- -CGa-GAGCCCC---------GGCGuCC-UGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 83821 0.69 0.382101
Target:  5'- ----gCGGGGUcggCGCGGGAUCCGGCAc -3'
miRNA:   3'- cgagaGCCCCG---GCGUCCUGGGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 11872 0.69 0.382101
Target:  5'- cGCUCgcCGGGGCCagacGCGGGGCCgaagacggaAGCAGu -3'
miRNA:   3'- -CGAGa-GCCCCGG----CGUCCUGGg--------UCGUU- -5'
5572 3' -62.6 NC_001806.1 + 50399 0.69 0.40668
Target:  5'- gGCUCUCGGuGGUCGUGGGggcGCgCCuGCAc -3'
miRNA:   3'- -CGAGAGCC-CCGGCGUCC---UG-GGuCGUu -5'
5572 3' -62.6 NC_001806.1 + 88088 0.69 0.414246
Target:  5'- aGCUCguucaggugggauUCGGGGagguCGCAGGAaCCgAGCGAa -3'
miRNA:   3'- -CGAG-------------AGCCCCg---GCGUCCU-GGgUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 3094 0.69 0.415092
Target:  5'- gGCgg-CGGcGGCCGCGGaGCUCGGCAGg -3'
miRNA:   3'- -CGagaGCC-CCGGCGUCcUGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 54127 0.69 0.432229
Target:  5'- -gUCcCGGGGCC-CAGGGgCCGGUAGg -3'
miRNA:   3'- cgAGaGCCCCGGcGUCCUgGGUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.