miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5573 3' -56 NC_001806.1 + 82738 0.66 0.899362
Target:  5'- cGGGGCggcggCgUCGUCGgGCGcuuuuauAGGCCcGGCg -3'
miRNA:   3'- -CUCCGa----G-AGCAGUgCGU-------UCUGGuCCG- -5'
5573 3' -56 NC_001806.1 + 83278 0.66 0.912385
Target:  5'- gGGGGUUCgggCGggCGCGgAGGACCccGCa -3'
miRNA:   3'- -CUCCGAGa--GCa-GUGCgUUCUGGucCG- -5'
5573 3' -56 NC_001806.1 + 86608 0.67 0.86504
Target:  5'- gGGGGCagaaacagCG-CGCGCGAGAUguGGCu -3'
miRNA:   3'- -CUCCGaga-----GCaGUGCGUUCUGguCCG- -5'
5573 3' -56 NC_001806.1 + 89496 0.68 0.816222
Target:  5'- aGGGCcuugUUUGUCugGCG-GAuCCGGGCg -3'
miRNA:   3'- cUCCGa---GAGCAGugCGUuCU-GGUCCG- -5'
5573 3' -56 NC_001806.1 + 90324 0.71 0.67197
Target:  5'- uGGGUUCUCG-CACGaCGGGGCuCGGGg -3'
miRNA:   3'- cUCCGAGAGCaGUGC-GUUCUG-GUCCg -5'
5573 3' -56 NC_001806.1 + 92679 0.68 0.833249
Target:  5'- -cGGCUCcUGUCGCGCGaggacaucgAGACCAucGCg -3'
miRNA:   3'- cuCCGAGaGCAGUGCGU---------UCUGGUc-CG- -5'
5573 3' -56 NC_001806.1 + 92897 0.71 0.661753
Target:  5'- cAGGCUgCggccgCGUggucCGCGCAGGGCgGGGCg -3'
miRNA:   3'- cUCCGA-Ga----GCA----GUGCGUUCUGgUCCG- -5'
5573 3' -56 NC_001806.1 + 103054 0.66 0.906313
Target:  5'- aGGGCgccugcgaUCUCGUgCACGUuccguucGAUCGGGCg -3'
miRNA:   3'- cUCCG--------AGAGCA-GUGCGuu-----CUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 110971 0.68 0.798522
Target:  5'- -cGGCUaCUaCGUUACGUGggcGGugCGGGCg -3'
miRNA:   3'- cuCCGA-GA-GCAGUGCGU---UCugGUCCG- -5'
5573 3' -56 NC_001806.1 + 112574 0.66 0.906313
Target:  5'- -cGGCgCUCGUgAUggGCAAGGCCGuGCg -3'
miRNA:   3'- cuCCGaGAGCAgUG--CGUUCUGGUcCG- -5'
5573 3' -56 NC_001806.1 + 116909 0.69 0.751781
Target:  5'- cGAGGCgCUCGUCGCcugGCu-GACCcacgcGGGCc -3'
miRNA:   3'- -CUCCGaGAGCAGUG---CGuuCUGG-----UCCG- -5'
5573 3' -56 NC_001806.1 + 123165 0.68 0.824823
Target:  5'- cGGGC-CUUGggCACGCGAGACUaucAGaGCa -3'
miRNA:   3'- cUCCGaGAGCa-GUGCGUUCUGG---UC-CG- -5'
5573 3' -56 NC_001806.1 + 125902 0.69 0.761377
Target:  5'- cGAGGCg---GcCACGCAAaACCAGGCc -3'
miRNA:   3'- -CUCCGagagCaGUGCGUUcUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 126514 1.1 0.002271
Target:  5'- gGAGGCUCUCGUCACGCAAGACCAGGCc -3'
miRNA:   3'- -CUCCGAGAGCAGUGCGUUCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 126885 0.82 0.161991
Target:  5'- cGGGGCUCUCGgggC-CGCAGGACCcagcaAGGCg -3'
miRNA:   3'- -CUCCGAGAGCa--GuGCGUUCUGG-----UCCG- -5'
5573 3' -56 NC_001806.1 + 128266 0.68 0.78944
Target:  5'- aAGGCgUUUGUCagcacgGCGCGAG-CCGGGCc -3'
miRNA:   3'- cUCCGaGAGCAG------UGCGUUCuGGUCCG- -5'
5573 3' -56 NC_001806.1 + 137695 0.66 0.914747
Target:  5'- cGGGGCgcugccggccuUUacccgcagcaagugaUCGUCAuCGaCGAGGCCGGGCu -3'
miRNA:   3'- -CUCCG-----------AG---------------AGCAGU-GC-GUUCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 140866 0.68 0.824823
Target:  5'- aGGGuaUCaaaCGUCACGUAGGGCCcgucgguacaGGGCg -3'
miRNA:   3'- -CUCcgAGa--GCAGUGCGUUCUGG----------UCCG- -5'
5573 3' -56 NC_001806.1 + 146953 0.66 0.896109
Target:  5'- cAGGCagucccccgugauagUCUUGuUCACGUAAGGCgacaGGGCg -3'
miRNA:   3'- cUCCG---------------AGAGC-AGUGCGUUCUGg---UCCG- -5'
5573 3' -56 NC_001806.1 + 147712 0.78 0.298851
Target:  5'- gGAGGCggcgCUCG-CACGCAcgGGGCCAcGGCc -3'
miRNA:   3'- -CUCCGa---GAGCaGUGCGU--UCUGGU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.