miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5573 3' -56 NC_001806.1 + 1497 0.71 0.651511
Target:  5'- gGGGGCgUCgUCGUCGggcuccaGCAGGGCgCGGGCg -3'
miRNA:   3'- -CUCCG-AG-AGCAGUg------CGUUCUG-GUCCG- -5'
5573 3' -56 NC_001806.1 + 3064 0.7 0.712426
Target:  5'- cAGGCUCUgguUGUCAaacaGCAGGuCCGcGGCg -3'
miRNA:   3'- cUCCGAGA---GCAGUg---CGUUCuGGU-CCG- -5'
5573 3' -56 NC_001806.1 + 3163 0.69 0.742077
Target:  5'- cAGGCUCaCGgCGCGCAcggcGGCCAcGGCg -3'
miRNA:   3'- cUCCGAGaGCaGUGCGUu---CUGGU-CCG- -5'
5573 3' -56 NC_001806.1 + 12122 0.67 0.857393
Target:  5'- uGAGuGCUgUCgGUCGCGCGAcACaGGGCg -3'
miRNA:   3'- -CUC-CGAgAG-CAGUGCGUUcUGgUCCG- -5'
5573 3' -56 NC_001806.1 + 14605 0.68 0.833249
Target:  5'- uGAGGCcCggaaGUCGCGCAugcuucaugGGucCCGGGCa -3'
miRNA:   3'- -CUCCGaGag--CAGUGCGU---------UCu-GGUCCG- -5'
5573 3' -56 NC_001806.1 + 21741 0.66 0.912385
Target:  5'- -cGGC-CgaccaCG-CACGCGAGGCgCGGGCc -3'
miRNA:   3'- cuCCGaGa----GCaGUGCGUUCUG-GUCCG- -5'
5573 3' -56 NC_001806.1 + 22305 0.7 0.702392
Target:  5'- cGGGGa---CGUgGCGCuGGACCAGGCc -3'
miRNA:   3'- -CUCCgagaGCAgUGCGuUCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 24096 0.7 0.732278
Target:  5'- aGGGCgugCUgcugcUGUcCACGCGGGACCuGGCc -3'
miRNA:   3'- cUCCGa--GA-----GCA-GUGCGUUCUGGuCCG- -5'
5573 3' -56 NC_001806.1 + 24601 0.68 0.822261
Target:  5'- gGAGGCccaCUCG-CACGCcgccugcgcgcgcuGGGGCCuGGGCg -3'
miRNA:   3'- -CUCCGa--GAGCaGUGCG--------------UUCUGG-UCCG- -5'
5573 3' -56 NC_001806.1 + 34019 0.67 0.841491
Target:  5'- gGGGGUgCUCGUCGauc--GACCGGGCu -3'
miRNA:   3'- -CUCCGaGAGCAGUgcguuCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 38418 0.66 0.905693
Target:  5'- gGGGGUcCUCGUCcagauCGCugucggaGAGGuCCAGGCc -3'
miRNA:   3'- -CUCCGaGAGCAGu----GCG-------UUCU-GGUCCG- -5'
5573 3' -56 NC_001806.1 + 39187 0.7 0.722391
Target:  5'- cGGGGCggcggcCUUGUCuGCGUucuugGGGGCCGGGCc -3'
miRNA:   3'- -CUCCGa-----GAGCAG-UGCG-----UUCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 51120 0.66 0.893464
Target:  5'- cGGGCgcacgUGUCggggagGCGCGcGACCGGGCu -3'
miRNA:   3'- cUCCGaga--GCAG------UGCGUuCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 55923 0.68 0.833249
Target:  5'- -cGGCUagCGUUcccggcaaaGCGAGACCGGGCa -3'
miRNA:   3'- cuCCGAgaGCAGug-------CGUUCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 63173 0.66 0.906313
Target:  5'- cAGGUUgUCGUUGcCGCGGGugCacugGGGCg -3'
miRNA:   3'- cUCCGAgAGCAGU-GCGUUCugG----UCCG- -5'
5573 3' -56 NC_001806.1 + 64883 0.67 0.86504
Target:  5'- -cGGCgggaUCGgC-CGCAAGACCAGcGCc -3'
miRNA:   3'- cuCCGag--AGCaGuGCGUUCUGGUC-CG- -5'
5573 3' -56 NC_001806.1 + 67213 0.66 0.906313
Target:  5'- -cGGC-CUggCGgggCGCGCugguGGGCCAGGUg -3'
miRNA:   3'- cuCCGaGA--GCa--GUGCGu---UCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 74740 0.73 0.509949
Target:  5'- gGAGGCaaugCUCGagggaGCGCGGGAgCGGGCg -3'
miRNA:   3'- -CUCCGa---GAGCag---UGCGUUCUgGUCCG- -5'
5573 3' -56 NC_001806.1 + 76565 0.71 0.641254
Target:  5'- gGAGGUgCUgGccgCGCGCGAGcGCCGGGCc -3'
miRNA:   3'- -CUCCGaGAgCa--GUGCGUUC-UGGUCCG- -5'
5573 3' -56 NC_001806.1 + 79504 0.66 0.886693
Target:  5'- -cGGCUCgCGaa--GCAcGACCGGGCg -3'
miRNA:   3'- cuCCGAGaGCagugCGUuCUGGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.