miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5573 3' -56 NC_001806.1 + 126514 1.1 0.002271
Target:  5'- gGAGGCUCUCGUCACGCAAGACCAGGCc -3'
miRNA:   3'- -CUCCGAGAGCAGUGCGUUCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 126885 0.82 0.161991
Target:  5'- cGGGGCUCUCGgggC-CGCAGGACCcagcaAGGCg -3'
miRNA:   3'- -CUCCGAGAGCa--GuGCGUUCUGG-----UCCG- -5'
5573 3' -56 NC_001806.1 + 147712 0.78 0.298851
Target:  5'- gGAGGCggcgCUCG-CACGCAcgGGGCCAcGGCc -3'
miRNA:   3'- -CUCCGa---GAGCaGUGCGU--UCUGGU-CCG- -5'
5573 3' -56 NC_001806.1 + 74740 0.73 0.509949
Target:  5'- gGAGGCaaugCUCGagggaGCGCGGGAgCGGGCg -3'
miRNA:   3'- -CUCCGa---GAGCag---UGCGUUCUgGUCCG- -5'
5573 3' -56 NC_001806.1 + 76565 0.71 0.641254
Target:  5'- gGAGGUgCUgGccgCGCGCGAGcGCCGGGCc -3'
miRNA:   3'- -CUCCGaGAgCa--GUGCGUUC-UGGUCCG- -5'
5573 3' -56 NC_001806.1 + 1497 0.71 0.651511
Target:  5'- gGGGGCgUCgUCGUCGggcuccaGCAGGGCgCGGGCg -3'
miRNA:   3'- -CUCCG-AG-AGCAGUg------CGUUCUG-GUCCG- -5'
5573 3' -56 NC_001806.1 + 92897 0.71 0.661753
Target:  5'- cAGGCUgCggccgCGUggucCGCGCAGGGCgGGGCg -3'
miRNA:   3'- cUCCGA-Ga----GCA----GUGCGUUCUGgUCCG- -5'
5573 3' -56 NC_001806.1 + 90324 0.71 0.67197
Target:  5'- uGGGUUCUCG-CACGaCGGGGCuCGGGg -3'
miRNA:   3'- cUCCGAGAGCaGUGC-GUUCUG-GUCCg -5'
5573 3' -56 NC_001806.1 + 22305 0.7 0.702392
Target:  5'- cGGGGa---CGUgGCGCuGGACCAGGCc -3'
miRNA:   3'- -CUCCgagaGCAgUGCGuUCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 3064 0.7 0.712426
Target:  5'- cAGGCUCUgguUGUCAaacaGCAGGuCCGcGGCg -3'
miRNA:   3'- cUCCGAGA---GCAGUg---CGUUCuGGU-CCG- -5'
5573 3' -56 NC_001806.1 + 39187 0.7 0.722391
Target:  5'- cGGGGCggcggcCUUGUCuGCGUucuugGGGGCCGGGCc -3'
miRNA:   3'- -CUCCGa-----GAGCAG-UGCG-----UUCUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 24096 0.7 0.732278
Target:  5'- aGGGCgugCUgcugcUGUcCACGCGGGACCuGGCc -3'
miRNA:   3'- cUCCGa--GA-----GCA-GUGCGUUCUGGuCCG- -5'
5573 3' -56 NC_001806.1 + 3163 0.69 0.742077
Target:  5'- cAGGCUCaCGgCGCGCAcggcGGCCAcGGCg -3'
miRNA:   3'- cUCCGAGaGCaGUGCGUu---CUGGU-CCG- -5'
5573 3' -56 NC_001806.1 + 116909 0.69 0.751781
Target:  5'- cGAGGCgCUCGUCGCcugGCu-GACCcacgcGGGCc -3'
miRNA:   3'- -CUCCGaGAGCAGUG---CGuuCUGG-----UCCG- -5'
5573 3' -56 NC_001806.1 + 125902 0.69 0.761377
Target:  5'- cGAGGCg---GcCACGCAAaACCAGGCc -3'
miRNA:   3'- -CUCCGagagCaGUGCGUUcUGGUCCG- -5'
5573 3' -56 NC_001806.1 + 128266 0.68 0.78944
Target:  5'- aAGGCgUUUGUCagcacgGCGCGAG-CCGGGCc -3'
miRNA:   3'- cUCCGaGAGCAG------UGCGUUCuGGUCCG- -5'
5573 3' -56 NC_001806.1 + 110971 0.68 0.798522
Target:  5'- -cGGCUaCUaCGUUACGUGggcGGugCGGGCg -3'
miRNA:   3'- cuCCGA-GA-GCAGUGCGU---UCugGUCCG- -5'
5573 3' -56 NC_001806.1 + 89496 0.68 0.816222
Target:  5'- aGGGCcuugUUUGUCugGCG-GAuCCGGGCg -3'
miRNA:   3'- cUCCGa---GAGCAGugCGUuCU-GGUCCG- -5'
5573 3' -56 NC_001806.1 + 24601 0.68 0.822261
Target:  5'- gGAGGCccaCUCG-CACGCcgccugcgcgcgcuGGGGCCuGGGCg -3'
miRNA:   3'- -CUCCGa--GAGCaGUGCG--------------UUCUGG-UCCG- -5'
5573 3' -56 NC_001806.1 + 123165 0.68 0.824823
Target:  5'- cGGGC-CUUGggCACGCGAGACUaucAGaGCa -3'
miRNA:   3'- cUCCGaGAGCa-GUGCGUUCUGG---UC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.