miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5573 5' -55.5 NC_001806.1 + 3870 0.73 0.589551
Target:  5'- cGGCCCGCGCCaCGcugccGGUGAu-GAAGGa -3'
miRNA:   3'- uCCGGGUGCGGaGC-----CCGCUuuUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 22121 0.73 0.598709
Target:  5'- cGGGCCUcugggggGCGCC-CGaGGCGGAGGAGGc -3'
miRNA:   3'- -UCCGGG-------UGCGGaGC-CCGCUUUUUUCc -5'
5573 5' -55.5 NC_001806.1 + 37271 0.73 0.599728
Target:  5'- cAGGCCuCGCGCCuUCaGGUagcacuGGAGAAAGGg -3'
miRNA:   3'- -UCCGG-GUGCGG-AGcCCG------CUUUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 37526 0.72 0.620147
Target:  5'- gAGGCUCGgGCCgUGGGCGAcc-AAGGu -3'
miRNA:   3'- -UCCGGGUgCGGaGCCCGCUuuuUUCC- -5'
5573 5' -55.5 NC_001806.1 + 59150 0.72 0.630375
Target:  5'- cGGGCCgGgGUCUCGGGUGcgggacgcGGAGGGGGc -3'
miRNA:   3'- -UCCGGgUgCGGAGCCCGC--------UUUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 28190 0.72 0.630375
Target:  5'- cGGGCgCCAUGUCUgGGGCGccauauuGGGGGg -3'
miRNA:   3'- -UCCG-GGUGCGGAgCCCGCuuu----UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 147171 0.72 0.650825
Target:  5'- cGGCCC-CGCC-CGaggaGGCGGAAGcgGAGGa -3'
miRNA:   3'- uCCGGGuGCGGaGC----CCGCUUUU--UUCC- -5'
5573 5' -55.5 NC_001806.1 + 23819 0.72 0.650825
Target:  5'- uGGCCCccugcGCGCCUCGGGCc-------- -3'
miRNA:   3'- uCCGGG-----UGCGGAGCCCGcuuuuuucc -5'
5573 5' -55.5 NC_001806.1 + 92912 0.71 0.670198
Target:  5'- uGGUCCGCGCa--GGGCGggGcgggccuGGAGGc -3'
miRNA:   3'- uCCGGGUGCGgagCCCGCuuU-------UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 73118 0.71 0.681367
Target:  5'- cGGGCCgCcgguCGCCgaggCGGGCGAGGAcgacGGGc -3'
miRNA:   3'- -UCCGG-Gu---GCGGa---GCCCGCUUUUu---UCC- -5'
5573 5' -55.5 NC_001806.1 + 10376 0.71 0.681367
Target:  5'- uGGGCCaa-GaCCUCggggGGGCGggGGGAGGc -3'
miRNA:   3'- -UCCGGgugC-GGAG----CCCGCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 99613 0.71 0.691478
Target:  5'- gGGGCgCGCGUCU-GGGUGGAAGGacauGGGg -3'
miRNA:   3'- -UCCGgGUGCGGAgCCCGCUUUUU----UCC- -5'
5573 5' -55.5 NC_001806.1 + 64779 0.71 0.691478
Target:  5'- cGGCCUccGCGuUCUCGGGCGuGAGuuccAGGGg -3'
miRNA:   3'- uCCGGG--UGC-GGAGCCCGCuUUU----UUCC- -5'
5573 5' -55.5 NC_001806.1 + 31895 0.71 0.691478
Target:  5'- uGGCCuCugGCCgccacaaaGGGCGggGGGGGu -3'
miRNA:   3'- uCCGG-GugCGGag------CCCGCuuUUUUCc -5'
5573 5' -55.5 NC_001806.1 + 2927 0.71 0.691478
Target:  5'- cGGGCCgC-CGCCUcCGGGCGGccGGGccGGg -3'
miRNA:   3'- -UCCGG-GuGCGGA-GCCCGCU--UUUuuCC- -5'
5573 5' -55.5 NC_001806.1 + 20382 0.71 0.691478
Target:  5'- uGGUCCcgGCGUCcggCGGGCGGGAccGGGGGg -3'
miRNA:   3'- uCCGGG--UGCGGa--GCCCGCUUU--UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 77443 0.71 0.70154
Target:  5'- -cGCCCGCGCC-CGGGCGuccgccccacccGGccAAGAGGc -3'
miRNA:   3'- ucCGGGUGCGGaGCCCGC------------UU--UUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 6072 0.71 0.710546
Target:  5'- cGGCCCcgggggcGgGCC-CGGGCGGcgGGGGGc -3'
miRNA:   3'- uCCGGG-------UgCGGaGCCCGCUuuUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 1548 0.71 0.711543
Target:  5'- cGGCCCGCGCCacCGGGCc-----GGGc -3'
miRNA:   3'- uCCGGGUGCGGa-GCCCGcuuuuuUCC- -5'
5573 5' -55.5 NC_001806.1 + 119628 0.7 0.72148
Target:  5'- uGGCCCcaGCGCCccaCGGGCccgGggGcGAGGa -3'
miRNA:   3'- uCCGGG--UGCGGa--GCCCG---CuuUuUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.