miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5573 5' -55.5 NC_001806.1 + 20174 0.67 0.878587
Target:  5'- cGGGCCCGCcCCcggggcCGGcGCGGAGucGGGc -3'
miRNA:   3'- -UCCGGGUGcGGa-----GCC-CGCUUUuuUCC- -5'
5573 5' -55.5 NC_001806.1 + 12424 0.67 0.878587
Target:  5'- gAGGCCCACGagcaccaggcCCUgcaaCGGGCGGcacggcaucccgGAAcGGGa -3'
miRNA:   3'- -UCCGGGUGC----------GGA----GCCCGCU------------UUUuUCC- -5'
5573 5' -55.5 NC_001806.1 + 100542 0.67 0.877874
Target:  5'- gGGGCCCcguucuuauacccGCGCgC-CGGcGCGGAAAcAGGc -3'
miRNA:   3'- -UCCGGG-------------UGCG-GaGCC-CGCUUUUuUCC- -5'
5573 5' -55.5 NC_001806.1 + 150886 0.67 0.871359
Target:  5'- aGGGCCCgggcacGgGCCUCGGGCccc---AGGc -3'
miRNA:   3'- -UCCGGG------UgCGGAGCCCGcuuuuuUCC- -5'
5573 5' -55.5 NC_001806.1 + 120127 0.68 0.863918
Target:  5'- cGGgCCGCGCUUCaGGGCGGc------ -3'
miRNA:   3'- uCCgGGUGCGGAG-CCCGCUuuuuucc -5'
5573 5' -55.5 NC_001806.1 + 70744 0.68 0.863918
Target:  5'- cGGCauuCACGCC-CGGGCGucGAAgcugcugucGGGa -3'
miRNA:   3'- uCCGg--GUGCGGaGCCCGCuuUUU---------UCC- -5'
5573 5' -55.5 NC_001806.1 + 77166 0.68 0.859352
Target:  5'- uGGCCCaacacgccgaccugaGCGCC-CGGcuGCGGGAcGAGGu -3'
miRNA:   3'- uCCGGG---------------UGCGGaGCC--CGCUUUuUUCC- -5'
5573 5' -55.5 NC_001806.1 + 28710 0.68 0.856268
Target:  5'- uGGGaCCCccgacuccgguGCGUCUggaGGGCGGGAGAAGa -3'
miRNA:   3'- -UCC-GGG-----------UGCGGAg--CCCGCUUUUUUCc -5'
5573 5' -55.5 NC_001806.1 + 5634 0.68 0.856268
Target:  5'- cGGCCCcgcccauccGCGCCaUCugccauGGGCGggGcgcGAGGGc -3'
miRNA:   3'- uCCGGG---------UGCGG-AG------CCCGCuuU---UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 6393 0.68 0.856268
Target:  5'- cGGGUaaGCaCCUugggUGGGCGGAGGAGGGg -3'
miRNA:   3'- -UCCGggUGcGGA----GCCCGCUUUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 99744 0.68 0.856268
Target:  5'- gGGGCgauaCACgGCCUcCGGGgGAcAAAGGGc -3'
miRNA:   3'- -UCCGg---GUG-CGGA-GCCCgCUuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 132688 0.68 0.856268
Target:  5'- gGGGgCCugGCC-CGcGGUGggGGccAGGGu -3'
miRNA:   3'- -UCCgGGugCGGaGC-CCGCuuUU--UUCC- -5'
5573 5' -55.5 NC_001806.1 + 113147 0.68 0.855492
Target:  5'- gGGGCagcgCCugGCCcaCGGGCGGGuccgaugggucgcGGAAGGc -3'
miRNA:   3'- -UCCG----GGugCGGa-GCCCGCUU-------------UUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 108962 0.68 0.848415
Target:  5'- cGGCCUACGagcCGGacuagcGCGggGAAGGGg -3'
miRNA:   3'- uCCGGGUGCggaGCC------CGCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 25867 0.68 0.840366
Target:  5'- -aGCCCGgGCCccccgCGGGCGcgcgcgcgcgcAAAAAAGGc -3'
miRNA:   3'- ucCGGGUgCGGa----GCCCGC-----------UUUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 36741 0.68 0.840366
Target:  5'- gGGGgaUGCGCC-CGGGCGGGAAgcuccuAAGGg -3'
miRNA:   3'- -UCCggGUGCGGaGCCCGCUUUU------UUCC- -5'
5573 5' -55.5 NC_001806.1 + 48865 0.68 0.840366
Target:  5'- cGGCCCGCGUauaaaGGCGAGAGcgcGGGa -3'
miRNA:   3'- uCCGGGUGCGgagc-CCGCUUUUu--UCC- -5'
5573 5' -55.5 NC_001806.1 + 84603 0.68 0.832128
Target:  5'- aAGGCCaagCugGCCUgCGGGaaCGAGuucGAGGGg -3'
miRNA:   3'- -UCCGG---GugCGGA-GCCC--GCUUu--UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 15698 0.68 0.832128
Target:  5'- cGGGUCCAgGCCggUCGGGUGuacggcGGGc -3'
miRNA:   3'- -UCCGGGUgCGG--AGCCCGCuuuuu-UCC- -5'
5573 5' -55.5 NC_001806.1 + 2583 0.68 0.832128
Target:  5'- aGGGCCgGuCGCCagGGGaCGggGAAcagcGGGu -3'
miRNA:   3'- -UCCGGgU-GCGGagCCC-GCuuUUU----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.