miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5573 5' -55.5 NC_001806.1 + 15072 0.66 0.91135
Target:  5'- cGGGCgaCugGUCUCGgGGCGcGcgGGGGa -3'
miRNA:   3'- -UCCGg-GugCGGAGC-CCGCuUuuUUCC- -5'
5573 5' -55.5 NC_001806.1 + 15698 0.68 0.832128
Target:  5'- cGGGUCCAgGCCggUCGGGUGuacggcGGGc -3'
miRNA:   3'- -UCCGGGUgCGG--AGCCCGCuuuuu-UCC- -5'
5573 5' -55.5 NC_001806.1 + 20101 0.69 0.788372
Target:  5'- uGGCCgGCGCCgucugCGGGCGuc----GGu -3'
miRNA:   3'- uCCGGgUGCGGa----GCCCGCuuuuuuCC- -5'
5573 5' -55.5 NC_001806.1 + 20174 0.67 0.878587
Target:  5'- cGGGCCCGCcCCcggggcCGGcGCGGAGucGGGc -3'
miRNA:   3'- -UCCGGGUGcGGa-----GCC-CGCUUUuuUCC- -5'
5573 5' -55.5 NC_001806.1 + 20382 0.71 0.691478
Target:  5'- uGGUCCcgGCGUCcggCGGGCGGGAccGGGGGg -3'
miRNA:   3'- uCCGGG--UGCGGa--GCCCGCUUU--UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 21266 0.66 0.91135
Target:  5'- --cCCCACGaCCUCGacgacgcccGGCGGGAcgGGAGGg -3'
miRNA:   3'- uccGGGUGC-GGAGC---------CCGCUUU--UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 21758 0.7 0.750792
Target:  5'- gAGGCgCGgGCCgUCGGGCGggGu---- -3'
miRNA:   3'- -UCCGgGUgCGG-AGCCCGCuuUuuucc -5'
5573 5' -55.5 NC_001806.1 + 21848 0.69 0.779166
Target:  5'- gAGGCCgCGCccaaGCCcCGGGCGGcggcGAGGa -3'
miRNA:   3'- -UCCGG-GUG----CGGaGCCCGCUuuu-UUCC- -5'
5573 5' -55.5 NC_001806.1 + 22068 0.66 0.917204
Target:  5'- cGGGCCCcCGCCcccgGGGCGGGu----- -3'
miRNA:   3'- -UCCGGGuGCGGag--CCCGCUUuuuucc -5'
5573 5' -55.5 NC_001806.1 + 22121 0.73 0.598709
Target:  5'- cGGGCCUcugggggGCGCC-CGaGGCGGAGGAGGc -3'
miRNA:   3'- -UCCGGG-------UGCGGaGC-CCGCUUUUUUCc -5'
5573 5' -55.5 NC_001806.1 + 23697 0.69 0.806356
Target:  5'- cGGGCCCugGCCUCGaucgccgcGCGGugcgccGGGc -3'
miRNA:   3'- -UCCGGGugCGGAGCc-------CGCUuuuu--UCC- -5'
5573 5' -55.5 NC_001806.1 + 23819 0.72 0.650825
Target:  5'- uGGCCCccugcGCGCCUCGGGCc-------- -3'
miRNA:   3'- uCCGGG-----UGCGGAGCCCGcuuuuuucc -5'
5573 5' -55.5 NC_001806.1 + 24330 0.67 0.892379
Target:  5'- cGGUgCugGCCUCGGGCc-------- -3'
miRNA:   3'- uCCGgGugCGGAGCCCGcuuuuuucc -5'
5573 5' -55.5 NC_001806.1 + 24909 0.69 0.788372
Target:  5'- cGGGCuuggCCACGCCccCGcGGCGGGAAGuuguGGa -3'
miRNA:   3'- -UCCG----GGUGCGGa-GC-CCGCUUUUUu---CC- -5'
5573 5' -55.5 NC_001806.1 + 25867 0.68 0.840366
Target:  5'- -aGCCCGgGCCccccgCGGGCGcgcgcgcgcgcAAAAAAGGc -3'
miRNA:   3'- ucCGGGUgCGGa----GCCCGC-----------UUUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 26810 0.82 0.203871
Target:  5'- -cGCCUGCGCCUgcgacgcgCGGGCGggGAGGGGg -3'
miRNA:   3'- ucCGGGUGCGGA--------GCCCGCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 26986 0.67 0.905259
Target:  5'- uGGGCCCGCGag-CGGGcCGAcc--GGGc -3'
miRNA:   3'- -UCCGGGUGCggaGCCC-GCUuuuuUCC- -5'
5573 5' -55.5 NC_001806.1 + 27070 0.66 0.917204
Target:  5'- gAGGCCCGUGCC-CGGGCc-------- -3'
miRNA:   3'- -UCCGGGUGCGGaGCCCGcuuuuuucc -5'
5573 5' -55.5 NC_001806.1 + 27332 0.7 0.741113
Target:  5'- gGGGCCCG-GCCcaUUGGGCGGGAGu--- -3'
miRNA:   3'- -UCCGGGUgCGG--AGCCCGCUUUUuucc -5'
5573 5' -55.5 NC_001806.1 + 28190 0.72 0.630375
Target:  5'- cGGGCgCCAUGUCUgGGGCGccauauuGGGGGg -3'
miRNA:   3'- -UCCG-GGUGCGGAgCCCGCuuu----UUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.