miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5573 5' -55.5 NC_001806.1 + 1548 0.71 0.711543
Target:  5'- cGGCCCGCGCCacCGGGCc-----GGGc -3'
miRNA:   3'- uCCGGGUGCGGa-GCCCGcuuuuuUCC- -5'
5573 5' -55.5 NC_001806.1 + 2530 0.7 0.769827
Target:  5'- cGGGCCCgGCGCaccgCGcGGCGAuc-GAGGc -3'
miRNA:   3'- -UCCGGG-UGCGga--GC-CCGCUuuuUUCC- -5'
5573 5' -55.5 NC_001806.1 + 2583 0.68 0.832128
Target:  5'- aGGGCCgGuCGCCagGGGaCGggGAAcagcGGGu -3'
miRNA:   3'- -UCCGGgU-GCGGagCCC-GCuuUUU----UCC- -5'
5573 5' -55.5 NC_001806.1 + 2791 0.74 0.519536
Target:  5'- cGGCCCgggGCGCCgcgggcUGGGCGggGGcGGGc -3'
miRNA:   3'- uCCGGG---UGCGGa-----GCCCGCuuUUuUCC- -5'
5573 5' -55.5 NC_001806.1 + 2827 0.67 0.897642
Target:  5'- cGGGCCCcggggGCGUggaggggggcgCGGGCGcgGGGAGGg -3'
miRNA:   3'- -UCCGGG-----UGCGga---------GCCCGCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 2927 0.71 0.691478
Target:  5'- cGGGCCgC-CGCCUcCGGGCGGccGGGccGGg -3'
miRNA:   3'- -UCCGG-GuGCGGA-GCCCGCU--UUUuuCC- -5'
5573 5' -55.5 NC_001806.1 + 3325 0.67 0.905259
Target:  5'- gGGGCCCGCGggucCCUCcGGCcGcgGGGGGc -3'
miRNA:   3'- -UCCGGGUGC----GGAGcCCGcUuuUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 3870 0.73 0.589551
Target:  5'- cGGCCCGCGCCaCGcugccGGUGAu-GAAGGa -3'
miRNA:   3'- uCCGGGUGCGGaGC-----CCGCUuuUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 4110 0.69 0.797439
Target:  5'- -cGCCUccucCGCCUCGGGCGccccccAGAGGc -3'
miRNA:   3'- ucCGGGu---GCGGAGCCCGCuuu---UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 4395 0.69 0.778237
Target:  5'- -cGCCCGgGgCUUGGGCGcggccucGGAGAGGGg -3'
miRNA:   3'- ucCGGGUgCgGAGCCCGC-------UUUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 4496 0.75 0.471578
Target:  5'- cGGCCCGCGCCUCGcGuGCGu-GGucGGc -3'
miRNA:   3'- uCCGGGUGCGGAGC-C-CGCuuUUuuCC- -5'
5573 5' -55.5 NC_001806.1 + 5634 0.68 0.856268
Target:  5'- cGGCCCcgcccauccGCGCCaUCugccauGGGCGggGcgcGAGGGc -3'
miRNA:   3'- uCCGGG---------UGCGG-AG------CCCGCuuU---UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 6072 0.71 0.710546
Target:  5'- cGGCCCcgggggcGgGCC-CGGGCGGcgGGGGGc -3'
miRNA:   3'- uCCGGG-------UgCGGaGCCCGCUuuUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 6393 0.68 0.856268
Target:  5'- cGGGUaaGCaCCUugggUGGGCGGAGGAGGGg -3'
miRNA:   3'- -UCCGggUGcGGA----GCCCGCUUUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 9023 0.74 0.529363
Target:  5'- cGGCCCuuuauGCGCCUCGGGCa-------- -3'
miRNA:   3'- uCCGGG-----UGCGGAGCCCGcuuuuuucc -5'
5573 5' -55.5 NC_001806.1 + 9788 0.66 0.922821
Target:  5'- gGGGCCCcgACGUg-CGGGUGGGu--GGGc -3'
miRNA:   3'- -UCCGGG--UGCGgaGCCCGCUUuuuUCC- -5'
5573 5' -55.5 NC_001806.1 + 10016 0.66 0.91135
Target:  5'- cGGGCuCCAUgugaGCCUCGGccgaacagcGCGguGGGGGGu -3'
miRNA:   3'- -UCCG-GGUG----CGGAGCC---------CGCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 10376 0.71 0.681367
Target:  5'- uGGGCCaa-GaCCUCggggGGGCGggGGGAGGc -3'
miRNA:   3'- -UCCGGgugC-GGAG----CCCGCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 12424 0.67 0.878587
Target:  5'- gAGGCCCACGagcaccaggcCCUgcaaCGGGCGGcacggcaucccgGAAcGGGa -3'
miRNA:   3'- -UCCGGGUGC----------GGA----GCCCGCU------------UUUuUCC- -5'
5573 5' -55.5 NC_001806.1 + 12806 0.7 0.741113
Target:  5'- cAGGCCCAUGUugUUCGgGGUGGccGGGGGa -3'
miRNA:   3'- -UCCGGGUGCG--GAGC-CCGCUuuUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.