miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5573 5' -55.5 NC_001806.1 + 101915 0.66 0.933338
Target:  5'- -cGCCC-CGCCU-GGGCGucAAGAcacAGGg -3'
miRNA:   3'- ucCGGGuGCGGAgCCCGCu-UUUU---UCC- -5'
5573 5' -55.5 NC_001806.1 + 9023 0.74 0.529363
Target:  5'- cGGCCCuuuauGCGCCUCGGGCa-------- -3'
miRNA:   3'- uCCGGG-----UGCGGAGCCCGcuuuuuucc -5'
5573 5' -55.5 NC_001806.1 + 124089 0.74 0.529363
Target:  5'- gGGGCCCgaaGCUUCGGGgGGucuGGGGGa -3'
miRNA:   3'- -UCCGGGug-CGGAGCCCgCUuu-UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 132908 0.74 0.529363
Target:  5'- cGGCCCugGCCgaccUCGGGgGGAGc-GGGc -3'
miRNA:   3'- uCCGGGugCGG----AGCCCgCUUUuuUCC- -5'
5573 5' -55.5 NC_001806.1 + 41231 0.74 0.538267
Target:  5'- uGGCCCAgGgCCUCGuggagccGGCGAAAGGGGa -3'
miRNA:   3'- uCCGGGUgC-GGAGC-------CCGCUUUUUUCc -5'
5573 5' -55.5 NC_001806.1 + 81830 0.74 0.549217
Target:  5'- aGGGCCUGUGCCaCGGGCGG--GAGGGc -3'
miRNA:   3'- -UCCGGGUGCGGaGCCCGCUuuUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 67516 0.74 0.549217
Target:  5'- gGGaGCCCugGgCCgUCGcGGCGAGAGAucGGGg -3'
miRNA:   3'- -UC-CGGGugC-GG-AGC-CCGCUUUUU--UCC- -5'
5573 5' -55.5 NC_001806.1 + 150982 0.73 0.569296
Target:  5'- cGGGCCCacgagccgcggcGCGCCaggCGGGCGGcc-GAGGc -3'
miRNA:   3'- -UCCGGG------------UGCGGa--GCCCGCUuuuUUCC- -5'
5573 5' -55.5 NC_001806.1 + 3870 0.73 0.589551
Target:  5'- cGGCCCGCGCCaCGcugccGGUGAu-GAAGGa -3'
miRNA:   3'- uCCGGGUGCGGaGC-----CCGCUuuUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 2791 0.74 0.519536
Target:  5'- cGGCCCgggGCGCCgcgggcUGGGCGggGGcGGGc -3'
miRNA:   3'- uCCGGG---UGCGGa-----GCCCGCuuUUuUCC- -5'
5573 5' -55.5 NC_001806.1 + 151315 0.75 0.490506
Target:  5'- cGGGCCUcugGCGCCggcUCGGGCGggGGGc-- -3'
miRNA:   3'- -UCCGGG---UGCGG---AGCCCGCuuUUUucc -5'
5573 5' -55.5 NC_001806.1 + 4496 0.75 0.471578
Target:  5'- cGGCCCGCGCCUCGcGuGCGu-GGucGGc -3'
miRNA:   3'- uCCGGGUGCGGAGC-C-CGCuuUUuuCC- -5'
5573 5' -55.5 NC_001806.1 + 26810 0.82 0.203871
Target:  5'- -cGCCUGCGCCUgcgacgcgCGGGCGggGAGGGGg -3'
miRNA:   3'- ucCGGGUGCGGA--------GCCCGCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 151263 0.81 0.230489
Target:  5'- cGGGCCCACGCC--GGGCGGu--GGGGg -3'
miRNA:   3'- -UCCGGGUGCGGagCCCGCUuuuUUCC- -5'
5573 5' -55.5 NC_001806.1 + 83251 0.8 0.25998
Target:  5'- aGGGCCCGCGggggggCGGGCGAcgGAGGGg -3'
miRNA:   3'- -UCCGGGUGCgga---GCCCGCUuuUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 83790 0.79 0.279112
Target:  5'- cGGaaCCUugGCCUCcggGGGCGAGGAGGGGg -3'
miRNA:   3'- uCC--GGGugCGGAG---CCCGCUUUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 74072 0.79 0.306339
Target:  5'- cGGaCCCAgGCCcgUCGGGCGAucGAGGGc -3'
miRNA:   3'- uCC-GGGUgCGG--AGCCCGCUuuUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 71355 0.78 0.350908
Target:  5'- cGGCCCACGCCa--GGCGGAccgcGAGGGGg -3'
miRNA:   3'- uCCGGGUGCGGagcCCGCUU----UUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 65707 0.77 0.374859
Target:  5'- gGGGCCCGCGCUUCGa-CGGGAGAGGa -3'
miRNA:   3'- -UCCGGGUGCGGAGCccGCUUUUUUCc -5'
5573 5' -55.5 NC_001806.1 + 48119 0.75 0.467837
Target:  5'- cAGGCCCGCGCCUCuGGGUacuuuauGGu -3'
miRNA:   3'- -UCCGGGUGCGGAG-CCCGcuuuuuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.