Results 1 - 20 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5573 | 5' | -55.5 | NC_001806.1 | + | 101915 | 0.66 | 0.933338 |
Target: 5'- -cGCCC-CGCCU-GGGCGucAAGAcacAGGg -3' miRNA: 3'- ucCGGGuGCGGAgCCCGCu-UUUU---UCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 21266 | 0.66 | 0.91135 |
Target: 5'- --cCCCACGaCCUCGacgacgcccGGCGGGAcgGGAGGg -3' miRNA: 3'- uccGGGUGC-GGAGC---------CCGCUUU--UUUCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 73857 | 0.66 | 0.91135 |
Target: 5'- uGGCCaaauuUGCC-CGuGGCGAAGAGauuAGGg -3' miRNA: 3'- uCCGGgu---GCGGaGC-CCGCUUUUU---UCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 74933 | 0.66 | 0.919479 |
Target: 5'- gGGcGCCCccugagguuacggcgGCGCUgCGGGCGGAcauguGGGGg -3' miRNA: 3'- -UC-CGGG---------------UGCGGaGCCCGCUUuu---UUCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 64910 | 0.66 | 0.917204 |
Target: 5'- cGGCCuCugGCgUCGGcGCGugu--GGGu -3' miRNA: 3'- uCCGG-GugCGgAGCC-CGCuuuuuUCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 49650 | 0.66 | 0.922821 |
Target: 5'- cGGGCCCGgaGCUcCGGGCGGc------ -3' miRNA: 3'- -UCCGGGUg-CGGaGCCCGCUuuuuucc -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 63911 | 0.66 | 0.91135 |
Target: 5'- -aGCCCgAUGCCcccguugCGGGCGAGGAu-GGc -3' miRNA: 3'- ucCGGG-UGCGGa------GCCCGCUUUUuuCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 46112 | 0.66 | 0.922821 |
Target: 5'- gGGGCCUgcgcggGCGCCUCcgccacccgcuGGGUccGGAGGGGc -3' miRNA: 3'- -UCCGGG------UGCGGAG-----------CCCGcuUUUUUCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 47032 | 0.66 | 0.913131 |
Target: 5'- gGGGuuuucucuuCCCGCGCCgUCGGGCGucccacacucucuGGGc -3' miRNA: 3'- -UCC---------GGGUGCGG-AGCCCGCuuuuu--------UCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 76832 | 0.66 | 0.920603 |
Target: 5'- cGGCCCGgGCCUCcuacgcgacaGGGCGcgcgccugcAGGc -3' miRNA: 3'- uCCGGGUgCGGAG----------CCCGCuuuuu----UCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 73735 | 0.66 | 0.922821 |
Target: 5'- cGGCCaaucuguauaCACGCCUCG-GCGAGu---GGc -3' miRNA: 3'- uCCGG----------GUGCGGAGCcCGCUUuuuuCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 9788 | 0.66 | 0.922821 |
Target: 5'- gGGGCCCcgACGUg-CGGGUGGGu--GGGc -3' miRNA: 3'- -UCCGGG--UGCGgaGCCCGCUUuuuUCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 71525 | 0.66 | 0.91135 |
Target: 5'- uGGUgUGCGgg-CGGGCGggGGGGGGg -3' miRNA: 3'- uCCGgGUGCggaGCCCGCuuUUUUCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 134227 | 0.66 | 0.917204 |
Target: 5'- uAGG-CCACGCagUCGGaGCGggGGGGcGGc -3' miRNA: 3'- -UCCgGGUGCGg-AGCC-CGCuuUUUU-CC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 47604 | 0.66 | 0.922821 |
Target: 5'- --uUCCACGCCgagcuaCGGGCGc-GGGAGGa -3' miRNA: 3'- uccGGGUGCGGa-----GCCCGCuuUUUUCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 22068 | 0.66 | 0.917204 |
Target: 5'- cGGGCCCcCGCCcccgGGGCGGGu----- -3' miRNA: 3'- -UCCGGGuGCGGag--CCCGCUUuuuucc -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 31186 | 0.66 | 0.91135 |
Target: 5'- cGGCCCcCGCgUCGGaGUGGAAc---- -3' miRNA: 3'- uCCGGGuGCGgAGCC-CGCUUUuuucc -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 33310 | 0.66 | 0.922821 |
Target: 5'- cGGCCgGCGCUuaGGGgGAGGAu--- -3' miRNA: 3'- uCCGGgUGCGGagCCCgCUUUUuucc -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 15072 | 0.66 | 0.91135 |
Target: 5'- cGGGCgaCugGUCUCGgGGCGcGcgGGGGa -3' miRNA: 3'- -UCCGg-GugCGGAGC-CCGCuUuuUUCC- -5' |
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5573 | 5' | -55.5 | NC_001806.1 | + | 27070 | 0.66 | 0.917204 |
Target: 5'- gAGGCCCGUGCC-CGGGCc-------- -3' miRNA: 3'- -UCCGGGUGCGGaGCCCGcuuuuuucc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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