miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5574 5' -53.6 NC_001806.1 + 73937 0.69 0.853988
Target:  5'- cGCGGGGUCGAcgcggucucacagcAcGCCGGGCCccucgGCg -3'
miRNA:   3'- -UGCUCCAGUU--------------UaCGGCCCGGuuca-UG- -5'
5574 5' -53.6 NC_001806.1 + 76543 0.66 0.94902
Target:  5'- aGCG-GGUCAcg-GCgGGGCUgcgggAGGUGCu -3'
miRNA:   3'- -UGCuCCAGUuuaCGgCCCGG-----UUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 76908 0.66 0.960919
Target:  5'- -gGAGGUCucucGAGgagGCCGaGGCgGAGUGg -3'
miRNA:   3'- ugCUCCAG----UUUa--CGGC-CCGgUUCAUg -5'
5574 5' -53.6 NC_001806.1 + 94181 0.66 0.964417
Target:  5'- gGCGucGUCugagGCCGGGCCuGGa-- -3'
miRNA:   3'- -UGCucCAGuuuaCGGCCCGGuUCaug -5'
5574 5' -53.6 NC_001806.1 + 95956 0.66 0.964417
Target:  5'- gGCGGGGggcUCGGGUGCUgauuGGGCCGucaGCg -3'
miRNA:   3'- -UGCUCC---AGUUUACGG----CCCGGUucaUG- -5'
5574 5' -53.6 NC_001806.1 + 96982 0.68 0.906452
Target:  5'- -gGGGGUC---UGUCGguccacGGCCAAGUACg -3'
miRNA:   3'- ugCUCCAGuuuACGGC------CCGGUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 100716 0.69 0.84833
Target:  5'- aGCGuguGGGUCAGcgccuccacGCCGGGCgccCAGGUGCg -3'
miRNA:   3'- -UGC---UCCAGUUua-------CGGCCCG---GUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 101960 0.68 0.893323
Target:  5'- aGCuGGGUCAGcucgaccGCCGGGUCGgcccGGUACa -3'
miRNA:   3'- -UGcUCCAGUUua-----CGGCCCGGU----UCAUG- -5'
5574 5' -53.6 NC_001806.1 + 109529 0.69 0.879234
Target:  5'- aGCGAGcUCGGGaGCCGGGggAGGUGCg -3'
miRNA:   3'- -UGCUCcAGUUUaCGGCCCggUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 117366 0.67 0.939876
Target:  5'- -gGAGGUCcg--GCCuGGGCCGcgaGGUAg -3'
miRNA:   3'- ugCUCCAGuuuaCGG-CCCGGU---UCAUg -5'
5574 5' -53.6 NC_001806.1 + 126335 1.1 0.003761
Target:  5'- uACGAGGUCAAAUGCCGGGCCAAGUACg -3'
miRNA:   3'- -UGCUCCAGUUUACGGCCCGGUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 129393 0.69 0.84833
Target:  5'- gACGAGGUUAugucGAcGCUGGGCCAGc--- -3'
miRNA:   3'- -UGCUCCAGU----UUaCGGCCCGGUUcaug -5'
5574 5' -53.6 NC_001806.1 + 134317 0.66 0.960919
Target:  5'- gGCG-GGUuguuggccagCAGGUaCCGGGCCAuGUACc -3'
miRNA:   3'- -UGCuCCA----------GUUUAcGGCCCGGUuCAUG- -5'
5574 5' -53.6 NC_001806.1 + 135850 0.66 0.964078
Target:  5'- -gGAGGguaccgUCGAcgGCCGGGgcgucuaUCAGGUGCc -3'
miRNA:   3'- ugCUCC------AGUUuaCGGCCC-------GGUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 145626 0.66 0.95484
Target:  5'- aGCGAGGauacggaggaguggCGGGUGCCGGGggaCCGGGg-- -3'
miRNA:   3'- -UGCUCCa-------------GUUUACGGCCC---GGUUCaug -5'
5574 5' -53.6 NC_001806.1 + 149981 0.74 0.624281
Target:  5'- cCGAGGUgCAAAUGCgaccagacuguCGGGCCAGGg-- -3'
miRNA:   3'- uGCUCCA-GUUUACG-----------GCCCGGUUCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.