miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5574 5' -53.6 NC_001806.1 + 1765 0.66 0.95719
Target:  5'- cGCGGGGaCAugggcaccggcGUGuCCGGGCCGAagcgcGUGCg -3'
miRNA:   3'- -UGCUCCaGUu----------UAC-GGCCCGGUU-----CAUG- -5'
5574 5' -53.6 NC_001806.1 + 2568 0.68 0.906452
Target:  5'- cGCG-GGUCAAAcaugaggGCCGGucGCCAGGggACg -3'
miRNA:   3'- -UGCuCCAGUUUa------CGGCC--CGGUUCa-UG- -5'
5574 5' -53.6 NC_001806.1 + 2919 0.67 0.9265
Target:  5'- -gGGGGUCGcgggccgccgccuccGGgcgGCCGGGCCGGGc-- -3'
miRNA:   3'- ugCUCCAGU---------------UUa--CGGCCCGGUUCaug -5'
5574 5' -53.6 NC_001806.1 + 4186 0.67 0.938907
Target:  5'- gGCGGGGgcccggcGCCGGGCCAcg-GCu -3'
miRNA:   3'- -UGCUCCaguuua-CGGCCCGGUucaUG- -5'
5574 5' -53.6 NC_001806.1 + 4609 0.66 0.944571
Target:  5'- gACGAGGUCGAugacGCCGauGGCCGc---- -3'
miRNA:   3'- -UGCUCCAGUUua--CGGC--CCGGUucaug -5'
5574 5' -53.6 NC_001806.1 + 11878 0.68 0.912648
Target:  5'- cCGGGGcCAGAcGCgGGGCCGAagACg -3'
miRNA:   3'- uGCUCCaGUUUaCGgCCCGGUUcaUG- -5'
5574 5' -53.6 NC_001806.1 + 20115 0.75 0.572092
Target:  5'- uGCGGGcGUCGGucgcGCCGGGCCuuuauGUGCg -3'
miRNA:   3'- -UGCUC-CAGUUua--CGGCCCGGuu---CAUG- -5'
5574 5' -53.6 NC_001806.1 + 28175 0.69 0.840072
Target:  5'- cGCGAGGUgAGggGCCGGGCg------ -3'
miRNA:   3'- -UGCUCCAgUUuaCGGCCCGguucaug -5'
5574 5' -53.6 NC_001806.1 + 30526 0.67 0.929737
Target:  5'- cCGAGGaaGAGgcgcggGUCGGGCCAGGa-- -3'
miRNA:   3'- uGCUCCagUUUa-----CGGCCCGGUUCaug -5'
5574 5' -53.6 NC_001806.1 + 34414 0.71 0.767571
Target:  5'- gGCcGGGcCGGGccggGCCGGGCCGGGUGg -3'
miRNA:   3'- -UGcUCCaGUUUa---CGGCCCGGUUCAUg -5'
5574 5' -53.6 NC_001806.1 + 34521 0.67 0.934932
Target:  5'- -gGGGGUgGGAgcgcggGCCGGGCCGcucGUAa -3'
miRNA:   3'- ugCUCCAgUUUa-----CGGCCCGGUu--CAUg -5'
5574 5' -53.6 NC_001806.1 + 41833 0.67 0.929737
Target:  5'- gGCGGGcGUCAGGgccCCGGGCgCGuacGUGCg -3'
miRNA:   3'- -UGCUC-CAGUUUac-GGCCCG-GUu--CAUG- -5'
5574 5' -53.6 NC_001806.1 + 42292 0.68 0.910815
Target:  5'- aACGAGGUCAggGacgcagcgcugacgGUGUCGGGgCGGGggGCg -3'
miRNA:   3'- -UGCUCCAGU--U--------------UACGGCCCgGUUCa-UG- -5'
5574 5' -53.6 NC_001806.1 + 49636 0.68 0.900009
Target:  5'- -gGAGGgacgcGUGCCGGGCCcGGaGCu -3'
miRNA:   3'- ugCUCCaguu-UACGGCCCGGuUCaUG- -5'
5574 5' -53.6 NC_001806.1 + 51787 0.67 0.939876
Target:  5'- aGCGGGGcC--GUGgC-GGCCAAGUACg -3'
miRNA:   3'- -UGCUCCaGuuUACgGcCCGGUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 59120 0.7 0.814139
Target:  5'- gACGAGGUgggcuucgguggUGAGggcaGCCGGGCCGgggucucgGGUGCg -3'
miRNA:   3'- -UGCUCCA------------GUUUa---CGGCCCGGU--------UCAUG- -5'
5574 5' -53.6 NC_001806.1 + 59609 0.67 0.9265
Target:  5'- ---uGGUCAAGcGCCGgggccuuggggccccGGCCGGGUACu -3'
miRNA:   3'- ugcuCCAGUUUaCGGC---------------CCGGUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 59812 0.68 0.912648
Target:  5'- cGCGGGGUCAAuuguauggaGCCGGuuguguuuggaGCCAAGgcCa -3'
miRNA:   3'- -UGCUCCAGUUua-------CGGCC-----------CGGUUCauG- -5'
5574 5' -53.6 NC_001806.1 + 67219 0.68 0.912648
Target:  5'- gGCGGGG-CGcgcUGgUGGGCCAGGUGa -3'
miRNA:   3'- -UGCUCCaGUuu-ACgGCCCGGUUCAUg -5'
5574 5' -53.6 NC_001806.1 + 69494 0.69 0.868819
Target:  5'- cGCGGGGUCGAAcguguuuggguugGCgCGGGaauaCGGGUACu -3'
miRNA:   3'- -UGCUCCAGUUUa------------CG-GCCCg---GUUCAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.