miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5574 5' -53.6 NC_001806.1 + 126335 1.1 0.003761
Target:  5'- uACGAGGUCAAAUGCCGGGCCAAGUACg -3'
miRNA:   3'- -UGCUCCAGUUUACGGCCCGGUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 20115 0.75 0.572092
Target:  5'- uGCGGGcGUCGGucgcGCCGGGCCuuuauGUGCg -3'
miRNA:   3'- -UGCUC-CAGUUua--CGGCCCGGuu---CAUG- -5'
5574 5' -53.6 NC_001806.1 + 149981 0.74 0.624281
Target:  5'- cCGAGGUgCAAAUGCgaccagacuguCGGGCCAGGg-- -3'
miRNA:   3'- uGCUCCA-GUUUACG-----------GCCCGGUUCaug -5'
5574 5' -53.6 NC_001806.1 + 34414 0.71 0.767571
Target:  5'- gGCcGGGcCGGGccggGCCGGGCCGGGUGg -3'
miRNA:   3'- -UGcUCCaGUUUa---CGGCCCGGUUCAUg -5'
5574 5' -53.6 NC_001806.1 + 59120 0.7 0.814139
Target:  5'- gACGAGGUgggcuucgguggUGAGggcaGCCGGGCCGgggucucgGGUGCg -3'
miRNA:   3'- -UGCUCCA------------GUUUa---CGGCCCGGU--------UCAUG- -5'
5574 5' -53.6 NC_001806.1 + 28175 0.69 0.840072
Target:  5'- cGCGAGGUgAGggGCCGGGCg------ -3'
miRNA:   3'- -UGCUCCAgUUuaCGGCCCGguucaug -5'
5574 5' -53.6 NC_001806.1 + 129393 0.69 0.84833
Target:  5'- gACGAGGUUAugucGAcGCUGGGCCAGc--- -3'
miRNA:   3'- -UGCUCCAGU----UUaCGGCCCGGUUcaug -5'
5574 5' -53.6 NC_001806.1 + 100716 0.69 0.84833
Target:  5'- aGCGuguGGGUCAGcgccuccacGCCGGGCgccCAGGUGCg -3'
miRNA:   3'- -UGC---UCCAGUUua-------CGGCCCG---GUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 73937 0.69 0.853988
Target:  5'- cGCGGGGUCGAcgcggucucacagcAcGCCGGGCCccucgGCg -3'
miRNA:   3'- -UGCUCCAGUU--------------UaCGGCCCGGuuca-UG- -5'
5574 5' -53.6 NC_001806.1 + 69494 0.69 0.868819
Target:  5'- cGCGGGGUCGAAcguguuuggguugGCgCGGGaauaCGGGUACu -3'
miRNA:   3'- -UGCUCCAGUUUa------------CG-GCCCg---GUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 109529 0.69 0.879234
Target:  5'- aGCGAGcUCGGGaGCCGGGggAGGUGCg -3'
miRNA:   3'- -UGCUCcAGUUUaCGGCCCggUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 101960 0.68 0.893323
Target:  5'- aGCuGGGUCAGcucgaccGCCGGGUCGgcccGGUACa -3'
miRNA:   3'- -UGcUCCAGUUua-----CGGCCCGGU----UCAUG- -5'
5574 5' -53.6 NC_001806.1 + 49636 0.68 0.900009
Target:  5'- -gGAGGgacgcGUGCCGGGCCcGGaGCu -3'
miRNA:   3'- ugCUCCaguu-UACGGCCCGGuUCaUG- -5'
5574 5' -53.6 NC_001806.1 + 96982 0.68 0.906452
Target:  5'- -gGGGGUC---UGUCGguccacGGCCAAGUACg -3'
miRNA:   3'- ugCUCCAGuuuACGGC------CCGGUUCAUG- -5'
5574 5' -53.6 NC_001806.1 + 2568 0.68 0.906452
Target:  5'- cGCG-GGUCAAAcaugaggGCCGGucGCCAGGggACg -3'
miRNA:   3'- -UGCuCCAGUUUa------CGGCC--CGGUUCa-UG- -5'
5574 5' -53.6 NC_001806.1 + 42292 0.68 0.910815
Target:  5'- aACGAGGUCAggGacgcagcgcugacgGUGUCGGGgCGGGggGCg -3'
miRNA:   3'- -UGCUCCAGU--U--------------UACGGCCCgGUUCa-UG- -5'
5574 5' -53.6 NC_001806.1 + 59812 0.68 0.912648
Target:  5'- cGCGGGGUCAAuuguauggaGCCGGuuguguuuggaGCCAAGgcCa -3'
miRNA:   3'- -UGCUCCAGUUua-------CGGCC-----------CGGUUCauG- -5'
5574 5' -53.6 NC_001806.1 + 67219 0.68 0.912648
Target:  5'- gGCGGGG-CGcgcUGgUGGGCCAGGUGa -3'
miRNA:   3'- -UGCUCCaGUuu-ACgGCCCGGUUCAUg -5'
5574 5' -53.6 NC_001806.1 + 11878 0.68 0.912648
Target:  5'- cCGGGGcCAGAcGCgGGGCCGAagACg -3'
miRNA:   3'- uGCUCCaGUUUaCGgCCCGGUUcaUG- -5'
5574 5' -53.6 NC_001806.1 + 59609 0.67 0.9265
Target:  5'- ---uGGUCAAGcGCCGgggccuuggggccccGGCCGGGUACu -3'
miRNA:   3'- ugcuCCAGUUUaCGGC---------------CCGGUUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.