miRNA display CGI


Results 21 - 40 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 3' -64.2 NC_001806.1 + 1704 0.66 0.580649
Target:  5'- gGUGGUccccGAGGCCGccgcccggccguccaGCGCCGGCAgCaCGGc -3'
miRNA:   3'- -CGCCG----CUCCGGC---------------CGCGGCUGU-GcGCC- -5'
5575 3' -64.2 NC_001806.1 + 140140 0.66 0.614811
Target:  5'- cGCGGCacacGGGGUgGGCGCCG-CGCc--- -3'
miRNA:   3'- -CGCCG----CUCCGgCCGCGGCuGUGcgcc -5'
5575 3' -64.2 NC_001806.1 + 30198 0.66 0.558088
Target:  5'- cGCGGCcgcgucGGGacCCGcGCGCCccCGCGCGGc -3'
miRNA:   3'- -CGCCGc-----UCC--GGC-CGCGGcuGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 10093 0.66 0.558088
Target:  5'- -aGGCGAGacGUccacguacucgCGGCGCaCGGCGCGuCGGc -3'
miRNA:   3'- cgCCGCUC--CG-----------GCCGCG-GCUGUGC-GCC- -5'
5575 3' -64.2 NC_001806.1 + 100703 0.66 0.575931
Target:  5'- gGCGGUGgaaagcagcguguGGGUCaGCGCCucCACGcCGGg -3'
miRNA:   3'- -CGCCGC-------------UCCGGcCGCGGcuGUGC-GCC- -5'
5575 3' -64.2 NC_001806.1 + 20180 0.66 0.576874
Target:  5'- cGCcccCGGGGCCGGCGCgGAguCG-GGc -3'
miRNA:   3'- -CGcc-GCUCCGGCCGCGgCUguGCgCC- -5'
5575 3' -64.2 NC_001806.1 + 77127 0.66 0.575931
Target:  5'- cCGaGCG-GGCCGGgGCCGugGaggagcuCGgGGg -3'
miRNA:   3'- cGC-CGCuCCGGCCgCGGCugU-------GCgCC- -5'
5575 3' -64.2 NC_001806.1 + 86015 0.66 0.567461
Target:  5'- gGgGGCGcuuGGCCGGgGagGGCAgggcCGCGGg -3'
miRNA:   3'- -CgCCGCu--CCGGCCgCggCUGU----GCGCC- -5'
5575 3' -64.2 NC_001806.1 + 15714 0.66 0.575931
Target:  5'- -gGGUGuacGGCgGGCGauuguucCCGGcCGCGCGGg -3'
miRNA:   3'- cgCCGCu--CCGgCCGC-------GGCU-GUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 52872 0.66 0.558088
Target:  5'- -aGGCGAccGCCGGCGgCGACGUGCc- -3'
miRNA:   3'- cgCCGCUc-CGGCCGCgGCUGUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 50726 0.66 0.576874
Target:  5'- aGCGGCu--GCUGGgcuuUGCCGACACcGUGGu -3'
miRNA:   3'- -CGCCGcucCGGCC----GCGGCUGUG-CGCC- -5'
5575 3' -64.2 NC_001806.1 + 101941 0.66 0.587267
Target:  5'- gGCGGCcAGGCCGGgaaacagcugggucaGCuCGAC-CGcCGGg -3'
miRNA:   3'- -CGCCGcUCCGGCCg--------------CG-GCUGuGC-GCC- -5'
5575 3' -64.2 NC_001806.1 + 22978 0.66 0.590108
Target:  5'- uGCGcGCGuGGCUGcgcgagcugcgguucGUGCgCGACGCGCuGGu -3'
miRNA:   3'- -CGC-CGCuCCGGC---------------CGCG-GCUGUGCG-CC- -5'
5575 3' -64.2 NC_001806.1 + 95437 0.66 0.576874
Target:  5'- cCGG-GGGGCaggGGC-CCGAgACGUGGg -3'
miRNA:   3'- cGCCgCUCCGg--CCGcGGCUgUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 21195 0.66 0.576874
Target:  5'- aGCGG-GGGGCCcucggguggGGCGCgGAgACGgaGGa -3'
miRNA:   3'- -CGCCgCUCCGG---------CCGCGgCUgUGCg-CC- -5'
5575 3' -64.2 NC_001806.1 + 136365 0.66 0.580649
Target:  5'- ---cCGGGGCCGGCGCgcuccgcggccuccgCGAC-CGUGGc -3'
miRNA:   3'- cgccGCUCCGGCCGCG---------------GCUGuGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 6152 0.66 0.561832
Target:  5'- aCGGCGccGGCCacgaacgacgggagcGGCuGCgGAgCACGCGGa -3'
miRNA:   3'- cGCCGCu-CCGG---------------CCG-CGgCU-GUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 40598 0.66 0.586321
Target:  5'- cGCGGCGAcaaacGCCGGaaCGUCuuuGCAgGCGGg -3'
miRNA:   3'- -CGCCGCUc----CGGCC--GCGGc--UGUgCGCC- -5'
5575 3' -64.2 NC_001806.1 + 100821 0.66 0.557153
Target:  5'- gGUGGCGAaagGGCgcgauggCGGCGUCGAgAC-CGGu -3'
miRNA:   3'- -CGCCGCU---CCG-------GCCGCGGCUgUGcGCC- -5'
5575 3' -64.2 NC_001806.1 + 55711 0.66 0.558088
Target:  5'- gGgGGUGAccuccgGGCUGGCgGCUGACcCGgGGg -3'
miRNA:   3'- -CgCCGCU------CCGGCCG-CGGCUGuGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.