miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 3' -64.2 NC_001806.1 + 140140 0.66 0.614811
Target:  5'- cGCGGCacacGGGGUgGGCGCCG-CGCc--- -3'
miRNA:   3'- -CGCCG----CUCCGgCCGCGGCuGUGcgcc -5'
5575 3' -64.2 NC_001806.1 + 55711 0.66 0.558088
Target:  5'- gGgGGUGAccuccgGGCUGGCgGCUGACcCGgGGg -3'
miRNA:   3'- -CgCCGCU------CCGGCCG-CGGCUGuGCgCC- -5'
5575 3' -64.2 NC_001806.1 + 21871 0.66 0.558088
Target:  5'- gGCGGCGAGGaCCcccGCgGCCu-C-CGCGGg -3'
miRNA:   3'- -CGCCGCUCC-GGc--CG-CGGcuGuGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 3517 0.66 0.558088
Target:  5'- gGCGGCGucgGGGUCGuCGCCcccCGCGgGGg -3'
miRNA:   3'- -CGCCGC---UCCGGCcGCGGcu-GUGCgCC- -5'
5575 3' -64.2 NC_001806.1 + 114352 0.66 0.558088
Target:  5'- gGCGGCGcccgacGCgGGCGCCaACAcCGCGu -3'
miRNA:   3'- -CGCCGCuc----CGgCCGCGGcUGU-GCGCc -5'
5575 3' -64.2 NC_001806.1 + 108547 0.66 0.555284
Target:  5'- uGCGGCu-GGCC-GCGCCcGCcgcuccgcggucaaACGCGGa -3'
miRNA:   3'- -CGCCGcuCCGGcCGCGGcUG--------------UGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 5896 0.66 0.557153
Target:  5'- gGCGGCccaaGGGCCGcccgccuuGCcgcccccccauugGCCGGCGgGCGGg -3'
miRNA:   3'- -CGCCGc---UCCGGC--------CG-------------CGGCUGUgCGCC- -5'
5575 3' -64.2 NC_001806.1 + 15714 0.66 0.575931
Target:  5'- -gGGUGuacGGCgGGCGauuguucCCGGcCGCGCGGg -3'
miRNA:   3'- cgCCGCu--CCGgCCGC-------GGCU-GUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 52872 0.66 0.558088
Target:  5'- -aGGCGAccGCCGGCGgCGACGUGCc- -3'
miRNA:   3'- cgCCGCUc-CGGCCGCgGCUGUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 51229 0.66 0.574046
Target:  5'- cCGGCGggucccgaccgaacGGGCgucaccaugCaGCGCCgGACGCGCGGc -3'
miRNA:   3'- cGCCGC--------------UCCG---------GcCGCGG-CUGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 77127 0.66 0.575931
Target:  5'- cCGaGCG-GGCCGGgGCCGugGaggagcuCGgGGg -3'
miRNA:   3'- cGC-CGCuCCGGCCgCGGCugU-------GCgCC- -5'
5575 3' -64.2 NC_001806.1 + 6152 0.66 0.561832
Target:  5'- aCGGCGccGGCCacgaacgacgggagcGGCuGCgGAgCACGCGGa -3'
miRNA:   3'- cGCCGCu-CCGG---------------CCG-CGgCU-GUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 10093 0.66 0.558088
Target:  5'- -aGGCGAGacGUccacguacucgCGGCGCaCGGCGCGuCGGc -3'
miRNA:   3'- cgCCGCUC--CG-----------GCCGCG-GCUGUGC-GCC- -5'
5575 3' -64.2 NC_001806.1 + 134783 0.66 0.558088
Target:  5'- cCGGCacccAGGCgCGaCGUCGACGCGCGc -3'
miRNA:   3'- cGCCGc---UCCG-GCcGCGGCUGUGCGCc -5'
5575 3' -64.2 NC_001806.1 + 57035 0.66 0.567461
Target:  5'- gGUGGCcGGGcCCGGgGCCGGgGCcccCGGc -3'
miRNA:   3'- -CGCCGcUCC-GGCCgCGGCUgUGc--GCC- -5'
5575 3' -64.2 NC_001806.1 + 30198 0.66 0.558088
Target:  5'- cGCGGCcgcgucGGGacCCGcGCGCCccCGCGCGGc -3'
miRNA:   3'- -CGCCGc-----UCC--GGC-CGCGGcuGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 4349 0.66 0.567461
Target:  5'- gGCGGCGcucgaugcGGCCcGCGgaGGC-CGCGGg -3'
miRNA:   3'- -CGCCGCu-------CCGGcCGCggCUGuGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 86015 0.66 0.567461
Target:  5'- gGgGGCGcuuGGCCGGgGagGGCAgggcCGCGGg -3'
miRNA:   3'- -CgCCGCu--CCGGCCgCggCUGU----GCGCC- -5'
5575 3' -64.2 NC_001806.1 + 100703 0.66 0.575931
Target:  5'- gGCGGUGgaaagcagcguguGGGUCaGCGCCucCACGcCGGg -3'
miRNA:   3'- -CGCCGC-------------UCCGGcCGCGGcuGUGC-GCC- -5'
5575 3' -64.2 NC_001806.1 + 123013 0.66 0.557153
Target:  5'- aUGGUGAGGCC--CGCCGACGCcucguccGCGc -3'
miRNA:   3'- cGCCGCUCCGGccGCGGCUGUG-------CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.