miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 3' -64.2 NC_001806.1 + 126140 1.1 0.000607
Target:  5'- gGCGGCGAGGCCGGCGCCGACACGCGGc -3'
miRNA:   3'- -CGCCGCUCCGGCCGCGGCUGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 151276 0.81 0.074342
Target:  5'- gGCGGUgGGGGCCGGgGCCGGgGgGCGGc -3'
miRNA:   3'- -CGCCG-CUCCGGCCgCGGCUgUgCGCC- -5'
5575 3' -64.2 NC_001806.1 + 37766 0.8 0.084181
Target:  5'- gGCGGCGGGcGCCuuucgcuccGGgGCCGGgGCGCGGg -3'
miRNA:   3'- -CGCCGCUC-CGG---------CCgCGGCUgUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 4657 0.79 0.090669
Target:  5'- cGCGGCGgcuGGGCCGGCGggcgcggCGACAgGCGGu -3'
miRNA:   3'- -CGCCGC---UCCGGCCGCg------GCUGUgCGCC- -5'
5575 3' -64.2 NC_001806.1 + 2739 0.79 0.095255
Target:  5'- uCGGCG-GGCCGGCGCgacacggccaCGGgGCGCGGg -3'
miRNA:   3'- cGCCGCuCCGGCCGCG----------GCUgUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 83817 0.79 0.095255
Target:  5'- gGgGGCGGGGUCGGCGCgggaucCGGCACGCa- -3'
miRNA:   3'- -CgCCGCUCCGGCCGCG------GCUGUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 101839 0.78 0.105092
Target:  5'- gGCGGUGAGGCgCaccaGCGCCGcCugGCGGg -3'
miRNA:   3'- -CGCCGCUCCG-Gc---CGCGGCuGugCGCC- -5'
5575 3' -64.2 NC_001806.1 + 4314 0.78 0.107697
Target:  5'- cGUGGCGucgcGGCCGGCcaCCGcCGCGCGGg -3'
miRNA:   3'- -CGCCGCu---CCGGCCGc-GGCuGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 147660 0.78 0.110362
Target:  5'- cGgGGCGGgcGGCCGGCuccgccccggggGCCGGgGCGCGGg -3'
miRNA:   3'- -CgCCGCU--CCGGCCG------------CGGCUgUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 2519 0.78 0.113089
Target:  5'- gGCGGCGGGGgcgggcCCGGCGCac-CGCGCGGc -3'
miRNA:   3'- -CGCCGCUCC------GGCCGCGgcuGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 151302 0.78 0.115879
Target:  5'- nGCGGCGguGGGCCgggccucuGGCGCCGGCucGgGCGGg -3'
miRNA:   3'- -CGCCGC--UCCGG--------CCGCGGCUG--UgCGCC- -5'
5575 3' -64.2 NC_001806.1 + 145642 0.78 0.12077
Target:  5'- aGUGGCGGGuGCCGGgGgaccggggugaucuCUGGCACGCGGg -3'
miRNA:   3'- -CGCCGCUC-CGGCCgC--------------GGCUGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 99944 0.77 0.124639
Target:  5'- aUGGCG-GGCCGcGCGCCGGgagucgacccCGCGCGGc -3'
miRNA:   3'- cGCCGCuCCGGC-CGCGGCU----------GUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 3577 0.77 0.134008
Target:  5'- gGCGGCGAGGauccccgCGGCGCCGuACcCgGCGGg -3'
miRNA:   3'- -CGCCGCUCCg------GCCGCGGC-UGuG-CGCC- -5'
5575 3' -64.2 NC_001806.1 + 151453 0.76 0.144023
Target:  5'- gGCGGCGGGG-CGGcCGCgGGCGCGCu- -3'
miRNA:   3'- -CGCCGCUCCgGCC-GCGgCUGUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 23940 0.76 0.146106
Target:  5'- gGCGGCGGGGCCugggggGGcCGCCGGagugguccgccgaGCGCGGc -3'
miRNA:   3'- -CGCCGCUCCGG------CC-GCGGCUg------------UGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 50649 0.76 0.154349
Target:  5'- gGCGuGCGGGGacgcgcaCCGGCGCCGggACgACGCGGc -3'
miRNA:   3'- -CGC-CGCUCC-------GGCCGCGGC--UG-UGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 23213 0.76 0.154717
Target:  5'- gGCGGCGGcGGCCaGCgcaccggacgccGCCGACGCGCuGGc -3'
miRNA:   3'- -CGCCGCU-CCGGcCG------------CGGCUGUGCG-CC- -5'
5575 3' -64.2 NC_001806.1 + 1546 0.76 0.162241
Target:  5'- cGCGGCccgcgccaccGGGCCGG-GCCGGCGCGCa- -3'
miRNA:   3'- -CGCCGc---------UCCGGCCgCGGCUGUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 21925 0.76 0.166125
Target:  5'- cGCGGCGGuGGCCGGC-CgCGACGCcaCGGg -3'
miRNA:   3'- -CGCCGCU-CCGGCCGcG-GCUGUGc-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.