miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 3' -64.2 NC_001806.1 + 1416 0.73 0.242613
Target:  5'- cGUGGcCGAGGCCcagcgaaucccgggcGGCGCCGGCG-GCaGGg -3'
miRNA:   3'- -CGCC-GCUCCGG---------------CCGCGGCUGUgCG-CC- -5'
5575 3' -64.2 NC_001806.1 + 1546 0.76 0.162241
Target:  5'- cGCGGCccgcgccaccGGGCCGG-GCCGGCGCGCa- -3'
miRNA:   3'- -CGCCGc---------UCCGGCCgCGGCUGUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 1615 0.68 0.450303
Target:  5'- aGCGGCGcgcccAGGCCccaGCGCgCG-CAgGCGGc -3'
miRNA:   3'- -CGCCGC-----UCCGGc--CGCG-GCuGUgCGCC- -5'
5575 3' -64.2 NC_001806.1 + 1704 0.66 0.580649
Target:  5'- gGUGGUccccGAGGCCGccgcccggccguccaGCGCCGGCAgCaCGGc -3'
miRNA:   3'- -CGCCG----CUCCGGC---------------CGCGGCUGU-GcGCC- -5'
5575 3' -64.2 NC_001806.1 + 1781 0.7 0.354972
Target:  5'- cCGGCGuguccGGGCCGaaGCGCgUGcGCACGCGGu -3'
miRNA:   3'- cGCCGC-----UCCGGC--CGCG-GC-UGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 1832 0.7 0.362354
Target:  5'- cGCGGCacAGGCgCaGCGgCGGCGCGuCGGg -3'
miRNA:   3'- -CGCCGc-UCCG-GcCGCgGCUGUGC-GCC- -5'
5575 3' -64.2 NC_001806.1 + 1889 0.68 0.450303
Target:  5'- cGCGcGCGAagacccCCGG-GCCGaACACGCGGc -3'
miRNA:   3'- -CGC-CGCUcc----GGCCgCGGC-UGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 1937 0.68 0.476261
Target:  5'- uGCGGCGcAGGucCCGcGcCGCCGGCcaGCGCa- -3'
miRNA:   3'- -CGCCGC-UCC--GGC-C-GCGGCUG--UGCGcc -5'
5575 3' -64.2 NC_001806.1 + 2037 0.66 0.595796
Target:  5'- uCGGCG-GGCCaGuCGCaGGCGCGCa- -3'
miRNA:   3'- cGCCGCuCCGGcC-GCGgCUGUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 2413 0.68 0.45887
Target:  5'- uGCGGCGcaGCgGGC-CCGAgGCGCGc -3'
miRNA:   3'- -CGCCGCucCGgCCGcGGCUgUGCGCc -5'
5575 3' -64.2 NC_001806.1 + 2462 0.66 0.590108
Target:  5'- gGCGGCcccgugGGGGUgGGgguuaucgucgucguCGCCGccgccGCACGCGGc -3'
miRNA:   3'- -CGCCG------CUCCGgCC---------------GCGGC-----UGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 2519 0.78 0.113089
Target:  5'- gGCGGCGGGGgcgggcCCGGCGCac-CGCGCGGc -3'
miRNA:   3'- -CGCCGCUCC------GGCCGCGgcuGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 2663 0.7 0.347697
Target:  5'- gGCGGCGGccGCgGGCGCCGcCGUGUGGc -3'
miRNA:   3'- -CGCCGCUc-CGgCCGCGGCuGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 2739 0.79 0.095255
Target:  5'- uCGGCG-GGCCGGCGCgacacggccaCGGgGCGCGGg -3'
miRNA:   3'- cGCCGCuCCGGCCGCG----------GCUgUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 2772 0.7 0.347697
Target:  5'- -nGGCG-GGCCuGCGCCGcggcggcccgggGCGcCGCGGg -3'
miRNA:   3'- cgCCGCuCCGGcCGCGGC------------UGU-GCGCC- -5'
5575 3' -64.2 NC_001806.1 + 2835 0.68 0.450303
Target:  5'- gGgGGCGuGGaggggGGCGCgGGCGCGgGGa -3'
miRNA:   3'- -CgCCGCuCCgg---CCGCGgCUGUGCgCC- -5'
5575 3' -64.2 NC_001806.1 + 2943 0.69 0.400836
Target:  5'- gGCGGCcGGGCCGG-GCCGGgACucuuGCGc -3'
miRNA:   3'- -CGCCGcUCCGGCCgCGGCUgUG----CGCc -5'
5575 3' -64.2 NC_001806.1 + 2990 0.74 0.200304
Target:  5'- cGCGGgGAGGCggCGGCgGCCGccaGCGCGuCGGc -3'
miRNA:   3'- -CGCCgCUCCG--GCCG-CGGC---UGUGC-GCC- -5'
5575 3' -64.2 NC_001806.1 + 3094 0.74 0.21959
Target:  5'- gGCGGCGGcGGCCGcGgaGCuCGGCagGCGCGGg -3'
miRNA:   3'- -CGCCGCU-CCGGC-Cg-CG-GCUG--UGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 3284 0.71 0.306305
Target:  5'- cGCaGGCGGGGC--GCGUCGGCGUGCGGc -3'
miRNA:   3'- -CG-CCGCUCCGgcCGCGGCUGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.