miRNA display CGI


Results 41 - 60 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 3' -64.2 NC_001806.1 + 132906 0.66 0.576874
Target:  5'- gGCGGCccuGGCCgaccucggggGGaGCgGGCugGCGGa -3'
miRNA:   3'- -CGCCGcu-CCGG----------CCgCGgCUGugCGCC- -5'
5575 3' -64.2 NC_001806.1 + 76230 0.66 0.576874
Target:  5'- cUGGaCGcccuCCGG-GCCGACGCGCGGc -3'
miRNA:   3'- cGCC-GCucc-GGCCgCGGCUGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 20180 0.66 0.576874
Target:  5'- cGCcccCGGGGCCGGCGCgGAguCG-GGc -3'
miRNA:   3'- -CGcc-GCUCCGGCCGCGgCUguGCgCC- -5'
5575 3' -64.2 NC_001806.1 + 50726 0.66 0.576874
Target:  5'- aGCGGCu--GCUGGgcuuUGCCGACACcGUGGu -3'
miRNA:   3'- -CGCCGcucCGGCC----GCGGCUGUG-CGCC- -5'
5575 3' -64.2 NC_001806.1 + 15714 0.66 0.575931
Target:  5'- -gGGUGuacGGCgGGCGauuguucCCGGcCGCGCGGg -3'
miRNA:   3'- cgCCGCu--CCGgCCGC-------GGCU-GUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 100703 0.66 0.575931
Target:  5'- gGCGGUGgaaagcagcguguGGGUCaGCGCCucCACGcCGGg -3'
miRNA:   3'- -CGCCGC-------------UCCGGcCGCGGcuGUGC-GCC- -5'
5575 3' -64.2 NC_001806.1 + 77127 0.66 0.575931
Target:  5'- cCGaGCG-GGCCGGgGCCGugGaggagcuCGgGGg -3'
miRNA:   3'- cGC-CGCuCCGGCCgCGGCugU-------GCgCC- -5'
5575 3' -64.2 NC_001806.1 + 51229 0.66 0.574046
Target:  5'- cCGGCGggucccgaccgaacGGGCgucaccaugCaGCGCCgGACGCGCGGc -3'
miRNA:   3'- cGCCGC--------------UCCG---------GcCGCGG-CUGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 86015 0.66 0.567461
Target:  5'- gGgGGCGcuuGGCCGGgGagGGCAgggcCGCGGg -3'
miRNA:   3'- -CgCCGCu--CCGGCCgCggCUGU----GCGCC- -5'
5575 3' -64.2 NC_001806.1 + 4349 0.66 0.567461
Target:  5'- gGCGGCGcucgaugcGGCCcGCGgaGGC-CGCGGg -3'
miRNA:   3'- -CGCCGCu-------CCGGcCGCggCUGuGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 57035 0.66 0.567461
Target:  5'- gGUGGCcGGGcCCGGgGCCGGgGCcccCGGc -3'
miRNA:   3'- -CGCCGcUCC-GGCCgCGGCUgUGc--GCC- -5'
5575 3' -64.2 NC_001806.1 + 6152 0.66 0.561832
Target:  5'- aCGGCGccGGCCacgaacgacgggagcGGCuGCgGAgCACGCGGa -3'
miRNA:   3'- cGCCGCu-CCGG---------------CCG-CGgCU-GUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 10093 0.66 0.558088
Target:  5'- -aGGCGAGacGUccacguacucgCGGCGCaCGGCGCGuCGGc -3'
miRNA:   3'- cgCCGCUC--CG-----------GCCGCG-GCUGUGC-GCC- -5'
5575 3' -64.2 NC_001806.1 + 52872 0.66 0.558088
Target:  5'- -aGGCGAccGCCGGCGgCGACGUGCc- -3'
miRNA:   3'- cgCCGCUc-CGGCCGCgGCUGUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 114352 0.66 0.558088
Target:  5'- gGCGGCGcccgacGCgGGCGCCaACAcCGCGu -3'
miRNA:   3'- -CGCCGCuc----CGgCCGCGGcUGU-GCGCc -5'
5575 3' -64.2 NC_001806.1 + 21871 0.66 0.558088
Target:  5'- gGCGGCGAGGaCCcccGCgGCCu-C-CGCGGg -3'
miRNA:   3'- -CGCCGCUCC-GGc--CG-CGGcuGuGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 55711 0.66 0.558088
Target:  5'- gGgGGUGAccuccgGGCUGGCgGCUGACcCGgGGg -3'
miRNA:   3'- -CgCCGCU------CCGGCCG-CGGCUGuGCgCC- -5'
5575 3' -64.2 NC_001806.1 + 134783 0.66 0.558088
Target:  5'- cCGGCacccAGGCgCGaCGUCGACGCGCGc -3'
miRNA:   3'- cGCCGc---UCCG-GCcGCGGCUGUGCGCc -5'
5575 3' -64.2 NC_001806.1 + 3517 0.66 0.558088
Target:  5'- gGCGGCGucgGGGUCGuCGCCcccCGCGgGGg -3'
miRNA:   3'- -CGCCGC---UCCGGCcGCGGcu-GUGCgCC- -5'
5575 3' -64.2 NC_001806.1 + 30198 0.66 0.558088
Target:  5'- cGCGGCcgcgucGGGacCCGcGCGCCccCGCGCGGc -3'
miRNA:   3'- -CGCCGc-----UCC--GGC-CGCGGcuGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.