miRNA display CGI


Results 21 - 40 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 5' -58.7 NC_001806.1 + 125566 0.71 0.528413
Target:  5'- cUCCugGGggcACCCAcgcccGCGACCcggaCGCCGAu -3'
miRNA:   3'- aAGGugCU---UGGGU-----CGCUGGa---GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 95607 0.7 0.547976
Target:  5'- gUCCACGGcgaggugcuGCCC-GCGACgUUCGCCGc -3'
miRNA:   3'- aAGGUGCU---------UGGGuCGCUG-GAGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 56624 0.7 0.56776
Target:  5'- -gCCGCGcGACCCuggccgguGCGACCUCaucgGCCGGc -3'
miRNA:   3'- aaGGUGC-UUGGGu-------CGCUGGAG----CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 45791 0.7 0.56776
Target:  5'- gUCCGCGcauccGACCCuAGCGugUUCGUgGAa -3'
miRNA:   3'- aAGGUGC-----UUGGG-UCGCugGAGCGgCU- -5'
5575 5' -58.7 NC_001806.1 + 108524 0.7 0.56776
Target:  5'- aUCCAgGuACCCGGCGGCC-CGCg-- -3'
miRNA:   3'- aAGGUgCuUGGGUCGCUGGaGCGgcu -5'
5575 5' -58.7 NC_001806.1 + 31863 0.7 0.577721
Target:  5'- uUUCCGCGAgcgccugcccGCCCGGacuGACCUgGCCu- -3'
miRNA:   3'- -AAGGUGCU----------UGGGUCg--CUGGAgCGGcu -5'
5575 5' -58.7 NC_001806.1 + 76218 0.69 0.59775
Target:  5'- aUCCGCGAucGCCUGGaCGcCCUCcggGCCGAc -3'
miRNA:   3'- aAGGUGCU--UGGGUC-GCuGGAG---CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 94950 0.69 0.59775
Target:  5'- -cUCGCG--UCCGGCGACCgCGCCGGc -3'
miRNA:   3'- aaGGUGCuuGGGUCGCUGGaGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 77059 0.69 0.607804
Target:  5'- -gCUGCGAGCCCAGCGggacuacgagcGCCUuccCGCCa- -3'
miRNA:   3'- aaGGUGCUUGGGUCGC-----------UGGA---GCGGcu -5'
5575 5' -58.7 NC_001806.1 + 125255 0.69 0.607804
Target:  5'- gUCCACGGuagGCCCAGC-AUgUCcGCCGGg -3'
miRNA:   3'- aAGGUGCU---UGGGUCGcUGgAG-CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 74869 0.69 0.607804
Target:  5'- gUCCugGcGACCCuGCgGGCCUCccuGCCGGc -3'
miRNA:   3'- aAGGugC-UUGGGuCG-CUGGAG---CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 126682 0.69 0.617876
Target:  5'- gUCCugGAGCuCCGGgGAUCUggucCGCCGc -3'
miRNA:   3'- aAGGugCUUG-GGUCgCUGGA----GCGGCu -5'
5575 5' -58.7 NC_001806.1 + 4366 0.69 0.638045
Target:  5'- -cCCGCGGagGCCgCGGgGGuCCUCGCCGc -3'
miRNA:   3'- aaGGUGCU--UGG-GUCgCU-GGAGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 66853 0.69 0.638045
Target:  5'- cUCCugGGGCCCgggcacacggcGGUGACgCUCGCUa- -3'
miRNA:   3'- aAGGugCUUGGG-----------UCGCUG-GAGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 19052 0.69 0.638045
Target:  5'- cUCCGCcucuGGGCCUGGCGcACCgagCGCCGu -3'
miRNA:   3'- aAGGUG----CUUGGGUCGC-UGGa--GCGGCu -5'
5575 5' -58.7 NC_001806.1 + 124565 0.69 0.638045
Target:  5'- cUCCACGAucGCCCGGgGgcaguuuuGCCUCcaggaGCCGGa -3'
miRNA:   3'- aAGGUGCU--UGGGUCgC--------UGGAG-----CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 41218 0.68 0.648126
Target:  5'- -cCCGCGccuaaaguGGCCCAG-GGCCUCGUgGAg -3'
miRNA:   3'- aaGGUGC--------UUGGGUCgCUGGAGCGgCU- -5'
5575 5' -58.7 NC_001806.1 + 70332 0.68 0.648126
Target:  5'- -cCCugGccGCCCGGgGggugcugcaggACCUCGCCGAg -3'
miRNA:   3'- aaGGugCu-UGGGUCgC-----------UGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 126371 0.68 0.658195
Target:  5'- -cCCAUGGAcCCCAGCGACCccacgGCCu- -3'
miRNA:   3'- aaGGUGCUU-GGGUCGCUGGag---CGGcu -5'
5575 5' -58.7 NC_001806.1 + 150986 0.68 0.658195
Target:  5'- -cCCACGAGCCgCGGCGcGCCaggcgggCGgCCGAg -3'
miRNA:   3'- aaGGUGCUUGG-GUCGC-UGGa------GC-GGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.