miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 5' -58.7 NC_001806.1 + 23693 0.66 0.810741
Target:  5'- -cCCGCGGGCCC--UGGCCucgaUCGCCGc -3'
miRNA:   3'- aaGGUGCUUGGGucGCUGG----AGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 24112 0.68 0.658195
Target:  5'- gUCCACGcggGACCUGGC--CUUCGCCGGg -3'
miRNA:   3'- aAGGUGC---UUGGGUCGcuGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 24789 0.67 0.737313
Target:  5'- -aCgACGAcgGCCCGGgGGCCcugcCGCCGGc -3'
miRNA:   3'- aaGgUGCU--UGGGUCgCUGGa---GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 24845 0.71 0.518729
Target:  5'- -gCCACGGGCCgCAGCGGCaccgUGCUGGc -3'
miRNA:   3'- aaGGUGCUUGG-GUCGCUGga--GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 26486 0.66 0.810741
Target:  5'- -cCCGCGGucaggagcgcGCCC-GCGGCCgcccCGCCGc -3'
miRNA:   3'- aaGGUGCU----------UGGGuCGCUGGa---GCGGCu -5'
5575 5' -58.7 NC_001806.1 + 26792 0.67 0.746895
Target:  5'- -aCCGCGGagcACCUGGCGcGCCUgCGCCu- -3'
miRNA:   3'- aaGGUGCU---UGGGUCGC-UGGA-GCGGcu -5'
5575 5' -58.7 NC_001806.1 + 26882 0.68 0.658195
Target:  5'- -cCCGCGAcCCCcGCGACCccCGCgCGGg -3'
miRNA:   3'- aaGGUGCUuGGGuCGCUGGa-GCG-GCU- -5'
5575 5' -58.7 NC_001806.1 + 31863 0.7 0.577721
Target:  5'- uUUCCGCGAgcgccugcccGCCCGGacuGACCUgGCCu- -3'
miRNA:   3'- -AAGGUGCU----------UGGGUCg--CUGGAgCGGcu -5'
5575 5' -58.7 NC_001806.1 + 32663 0.68 0.697194
Target:  5'- --aCACGAGCCCacccgcgAGUGGCgUgGCCGAc -3'
miRNA:   3'- aagGUGCUUGGG-------UCGCUGgAgCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 34555 0.67 0.746895
Target:  5'- -gCCGCG-ACCCGGCcGCCggggagcguugUCGCCGu -3'
miRNA:   3'- aaGGUGCuUGGGUCGcUGG-----------AGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 35558 0.74 0.352339
Target:  5'- cUCgGCGcGCCCGGCG-CCgCGCCGAa -3'
miRNA:   3'- aAGgUGCuUGGGUCGCuGGaGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 40589 0.66 0.810741
Target:  5'- gUCgGCGuGCgCGGCGACaaaCGCCGGa -3'
miRNA:   3'- aAGgUGCuUGgGUCGCUGga-GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 41218 0.68 0.648126
Target:  5'- -cCCGCGccuaaaguGGCCCAG-GGCCUCGUgGAg -3'
miRNA:   3'- aaGGUGC--------UUGGGUCgCUGGAGCGgCU- -5'
5575 5' -58.7 NC_001806.1 + 43115 0.68 0.658195
Target:  5'- cUCCACGGgaguCCCGGCcGCC-CGCCu- -3'
miRNA:   3'- aAGGUGCUu---GGGUCGcUGGaGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 44292 0.75 0.315277
Target:  5'- -aCCAgGAGCUgGGCGACCUuggCGCCGGc -3'
miRNA:   3'- aaGGUgCUUGGgUCGCUGGA---GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 44448 0.74 0.360112
Target:  5'- -gCCGCGGGCCCGGCGuCCgCGUgGAg -3'
miRNA:   3'- aaGGUGCUUGGGUCGCuGGaGCGgCU- -5'
5575 5' -58.7 NC_001806.1 + 45791 0.7 0.56776
Target:  5'- gUCCGCGcauccGACCCuAGCGugUUCGUgGAa -3'
miRNA:   3'- aAGGUGC-----UUGGG-UCGCugGAGCGgCU- -5'
5575 5' -58.7 NC_001806.1 + 49135 0.67 0.737313
Target:  5'- aUCCACccGCCCccGCG-CCUCGCCc- -3'
miRNA:   3'- aAGGUGcuUGGGu-CGCuGGAGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 49300 0.67 0.760143
Target:  5'- -cCCGCGAGCCCgacgacGGCGcgcgucggaagccccGCCcacaucccaUCGCCGAg -3'
miRNA:   3'- aaGGUGCUUGGG------UCGC---------------UGG---------AGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 55178 0.67 0.737313
Target:  5'- -cCCugGGuCgCgGGCGucACCUCGCCGAu -3'
miRNA:   3'- aaGGugCUuG-GgUCGC--UGGAGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.