miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 5' -58.7 NC_001806.1 + 1543 0.66 0.810741
Target:  5'- cUCCGCG-GCCCGcGCcACCggGCCGGg -3'
miRNA:   3'- aAGGUGCuUGGGU-CGcUGGagCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 1604 0.66 0.775019
Target:  5'- --aCACGGGCCgCAGCGGCg-CGCCc- -3'
miRNA:   3'- aagGUGCUUGG-GUCGCUGgaGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 2117 0.66 0.810741
Target:  5'- cUCCACGGcCCCGGCGAaggccaggucCCgCGUgGAc -3'
miRNA:   3'- aAGGUGCUuGGGUCGCU----------GGaGCGgCU- -5'
5575 5' -58.7 NC_001806.1 + 2528 0.67 0.70807
Target:  5'- ---gGCGGGCCCGGCGcACCgcgCGgCGAu -3'
miRNA:   3'- aaggUGCUUGGGUCGC-UGGa--GCgGCU- -5'
5575 5' -58.7 NC_001806.1 + 3177 0.73 0.400739
Target:  5'- --gCACGGcgGCCaCGGCGGCCUCGCUGc -3'
miRNA:   3'- aagGUGCU--UGG-GUCGCUGGAGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 3473 0.66 0.793162
Target:  5'- -gCCugGGcgcggcGCCCGGCGuCgUCGUCGGc -3'
miRNA:   3'- aaGGugCU------UGGGUCGCuGgAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 3950 0.67 0.70807
Target:  5'- -gCCACGucCCCGGgGACCaCGCgCGGg -3'
miRNA:   3'- aaGGUGCuuGGGUCgCUGGaGCG-GCU- -5'
5575 5' -58.7 NC_001806.1 + 4339 0.71 0.518729
Target:  5'- --gCGCGGGCCCGGCGGCgCUCGaugCGGc -3'
miRNA:   3'- aagGUGCUUGGGUCGCUG-GAGCg--GCU- -5'
5575 5' -58.7 NC_001806.1 + 4366 0.69 0.638045
Target:  5'- -cCCGCGGagGCCgCGGgGGuCCUCGCCGc -3'
miRNA:   3'- aaGGUGCU--UGG-GUCgCU-GGAGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 4918 0.75 0.287804
Target:  5'- -aCgGCGucCCCGGCGuCCUCGCCGGc -3'
miRNA:   3'- aaGgUGCuuGGGUCGCuGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 5248 0.73 0.417788
Target:  5'- -cCCACGGACCCcGaCGACCccCGCCGu -3'
miRNA:   3'- aaGGUGCUUGGGuC-GCUGGa-GCGGCu -5'
5575 5' -58.7 NC_001806.1 + 6708 0.67 0.741157
Target:  5'- cUUCCugGAcaccaugcggguuggGCCCAG-GACgUaCGCCGAc -3'
miRNA:   3'- -AAGGugCU---------------UGGGUCgCUGgA-GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 16708 0.66 0.802026
Target:  5'- -gCCACGucgUCCggGGCGuCCUCGUCGAc -3'
miRNA:   3'- aaGGUGCuu-GGG--UCGCuGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 19052 0.69 0.638045
Target:  5'- cUCCGCcucuGGGCCUGGCGcACCgagCGCCGu -3'
miRNA:   3'- aAGGUG----CUUGGGUCGC-UGGa--GCGGCu -5'
5575 5' -58.7 NC_001806.1 + 20269 0.68 0.702147
Target:  5'- cUUCGCGuucucacuucuuuuACCCGGCGGCCcCGCCc- -3'
miRNA:   3'- aAGGUGCu-------------UGGGUCGCUGGaGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 20655 0.71 0.518729
Target:  5'- -gCCACGGGCCCccGGCGugCcggCGUCGGg -3'
miRNA:   3'- aaGGUGCUUGGG--UCGCugGa--GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 21404 0.75 0.287804
Target:  5'- aUCC-CGAcgcccgACCCcGCGGCCUCGCCGc -3'
miRNA:   3'- aAGGuGCU------UGGGuCGCUGGAGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 21892 0.66 0.775019
Target:  5'- cUCCGCGGGCCgCAuCGAgCgcCGCCGGg -3'
miRNA:   3'- aAGGUGCUUGG-GUcGCUgGa-GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 22930 0.67 0.756379
Target:  5'- -cCCGCGGGCCCcGCuuCCcCGCCGc -3'
miRNA:   3'- aaGGUGCUUGGGuCGcuGGaGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 23475 0.66 0.805531
Target:  5'- -gCCGCGGcgcaggcccgcccgcGCCCcGUGGCCgugucgCGCCGGc -3'
miRNA:   3'- aaGGUGCU---------------UGGGuCGCUGGa-----GCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.