Results 1 - 20 of 94 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 100446 | 0.66 | 0.765756 |
Target: 5'- -aCCGgGGACaaGGCGACCccgCGCUGAc -3' miRNA: 3'- aaGGUgCUUGggUCGCUGGa--GCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 23475 | 0.66 | 0.805531 |
Target: 5'- -gCCGCGGcgcaggcccgcccgcGCCCcGUGGCCgugucgCGCCGGc -3' miRNA: 3'- aaGGUGCU---------------UGGGuCGCUGGa-----GCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 74363 | 0.66 | 0.765756 |
Target: 5'- -cCCGaGGACCUGGCGGCCUgGCUc- -3' miRNA: 3'- aaGGUgCUUGGGUCGCUGGAgCGGcu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 3473 | 0.66 | 0.793162 |
Target: 5'- -gCCugGGcgcggcGCCCGGCGuCgUCGUCGGc -3' miRNA: 3'- aaGGugCU------UGGGUCGCuGgAGCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 138683 | 0.66 | 0.775019 |
Target: 5'- -gCCugGAugcgACCCAGagGACCcUCGCCu- -3' miRNA: 3'- aaGGugCU----UGGGUCg-CUGG-AGCGGcu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 78592 | 0.66 | 0.784157 |
Target: 5'- -cCCACGGG-CCAGC-ACgUCGCCGu -3' miRNA: 3'- aaGGUGCUUgGGUCGcUGgAGCGGCu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 16708 | 0.66 | 0.802026 |
Target: 5'- -gCCACGucgUCCggGGCGuCCUCGUCGAc -3' miRNA: 3'- aaGGUGCuu-GGG--UCGCuGGAGCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 1604 | 0.66 | 0.775019 |
Target: 5'- --aCACGGGCCgCAGCGGCg-CGCCc- -3' miRNA: 3'- aagGUGCUUGG-GUCGCUGgaGCGGcu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 84194 | 0.66 | 0.784157 |
Target: 5'- -aCC-CGAuGCCCAGCccGACCUCGaCCu- -3' miRNA: 3'- aaGGuGCU-UGGGUCG--CUGGAGC-GGcu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 91520 | 0.66 | 0.784157 |
Target: 5'- -aCCugGAGCgCuGCGACggCGCCGu -3' miRNA: 3'- aaGGugCUUGgGuCGCUGgaGCGGCu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 118447 | 0.66 | 0.810741 |
Target: 5'- aUCCggGCGAAUaaAGuUGGCCUCGUCGAc -3' miRNA: 3'- aAGG--UGCUUGggUC-GCUGGAGCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 135810 | 0.66 | 0.793162 |
Target: 5'- -cCCGCaGACCC-GCGGcuguuuccgcCCUUGCCGAa -3' miRNA: 3'- aaGGUGcUUGGGuCGCU----------GGAGCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 84962 | 0.66 | 0.784157 |
Target: 5'- --aCACGAGCgCCAGCGcuaucgggGCCuuuUCGCCGc -3' miRNA: 3'- aagGUGCUUG-GGUCGC--------UGG---AGCGGCu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 126461 | 0.66 | 0.802026 |
Target: 5'- aUCC-CGaAGCCCAGCGugCgauacuucgCGCCc- -3' miRNA: 3'- aAGGuGC-UUGGGUCGCugGa--------GCGGcu -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 150817 | 0.66 | 0.790475 |
Target: 5'- cUCCGCGGaagACCCAgGCcGCCUCGgguguaacguuagaCCGAg -3' miRNA: 3'- aAGGUGCU---UGGGU-CGcUGGAGC--------------GGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 64153 | 0.66 | 0.775019 |
Target: 5'- -gCCGCGcguGGCCCGGCaGGCCaaaaaGCCGGc -3' miRNA: 3'- aaGGUGC---UUGGGUCG-CUGGag---CGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 87658 | 0.66 | 0.793162 |
Target: 5'- gUUgCGCGGGCCCGGCGGCgUaguaGgCGGg -3' miRNA: 3'- -AAgGUGCUUGGGUCGCUGgAg---CgGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 65564 | 0.66 | 0.802026 |
Target: 5'- --aCGCGGACCCgGGCG-UCUUGUCGGa -3' miRNA: 3'- aagGUGCUUGGG-UCGCuGGAGCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 71956 | 0.66 | 0.808143 |
Target: 5'- -aCCGCGGGCCCugGGCcGCCgcgcauguguucgaUCGUCGAg -3' miRNA: 3'- aaGGUGCUUGGG--UCGcUGG--------------AGCGGCU- -5' |
|||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 139737 | 0.66 | 0.784157 |
Target: 5'- -gCCACG---CCAG-GGCCUCGCUGAc -3' miRNA: 3'- aaGGUGCuugGGUCgCUGGAGCGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home