miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 5' -58.7 NC_001806.1 + 118447 0.66 0.810741
Target:  5'- aUCCggGCGAAUaaAGuUGGCCUCGUCGAc -3'
miRNA:   3'- aAGG--UGCUUGggUC-GCUGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 112255 0.72 0.435271
Target:  5'- -aCCAgGGugGCCCgGGCGACCcuggUCGCCGAg -3'
miRNA:   3'- aaGGUgCU--UGGG-UCGCUGG----AGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 131460 0.72 0.462268
Target:  5'- gUCCGCGGA-CCGGCGGCgCUguUGCCGGa -3'
miRNA:   3'- aAGGUGCUUgGGUCGCUG-GA--GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 123240 0.71 0.499578
Target:  5'- -cCCACGcGGCCCuGCGccgacGCCUgGCCGAg -3'
miRNA:   3'- aaGGUGC-UUGGGuCGC-----UGGAgCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 107627 0.71 0.508158
Target:  5'- gUCCugGcccagcaGACCCA-CGGCCUCGCCu- -3'
miRNA:   3'- aAGGugC-------UUGGGUcGCUGGAGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 24845 0.71 0.518729
Target:  5'- -gCCACGGGCCgCAGCGGCaccgUGCUGGc -3'
miRNA:   3'- aaGGUGCUUGG-GUCGCUGga--GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 20655 0.71 0.518729
Target:  5'- -gCCACGGGCCCccGGCGugCcggCGUCGGg -3'
miRNA:   3'- aaGGUGCUUGGG--UCGCugGa--GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 4339 0.71 0.518729
Target:  5'- --gCGCGGGCCCGGCGGCgCUCGaugCGGc -3'
miRNA:   3'- aagGUGCUUGGGUCGCUG-GAGCg--GCU- -5'
5575 5' -58.7 NC_001806.1 + 86653 0.71 0.518729
Target:  5'- -cCCACGGccgucaGCCCGGCGGCCgugagGCCGc -3'
miRNA:   3'- aaGGUGCU------UGGGUCGCUGGag---CGGCu -5'
5575 5' -58.7 NC_001806.1 + 107437 0.72 0.435271
Target:  5'- gUCCgACGucGCCgCAGCGACCaaCGCCGAc -3'
miRNA:   3'- aAGG-UGCu-UGG-GUCGCUGGa-GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 68196 0.72 0.426476
Target:  5'- aUUgGCGAGCCUAGcCGGCCuUCGCCa- -3'
miRNA:   3'- aAGgUGCUUGGGUC-GCUGG-AGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 5248 0.73 0.417788
Target:  5'- -cCCACGGACCCcGaCGACCccCGCCGu -3'
miRNA:   3'- aaGGUGCUUGGGuC-GCUGGa-GCGGCu -5'
5575 5' -58.7 NC_001806.1 + 4918 0.75 0.287804
Target:  5'- -aCgGCGucCCCGGCGuCCUCGCCGGc -3'
miRNA:   3'- aaGgUGCuuGGGUCGCuGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 21404 0.75 0.287804
Target:  5'- aUCC-CGAcgcccgACCCcGCGGCCUCGCCGc -3'
miRNA:   3'- aAGGuGCU------UGGGuCGCUGGAGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 76307 0.75 0.294491
Target:  5'- aUCCGCGGugcgcaacgACCCGGCGGCggcCGCCGAg -3'
miRNA:   3'- aAGGUGCU---------UGGGUCGCUGga-GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 44292 0.75 0.315277
Target:  5'- -aCCAgGAGCUgGGCGACCUuggCGCCGGc -3'
miRNA:   3'- aaGGUgCUUGGgUCGCUGGA---GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 132727 0.75 0.315277
Target:  5'- -cCCGCGAgcugGCCCGGCGugGCCUCGgCGGc -3'
miRNA:   3'- aaGGUGCU----UGGGUCGC--UGGAGCgGCU- -5'
5575 5' -58.7 NC_001806.1 + 35558 0.74 0.352339
Target:  5'- cUCgGCGcGCCCGGCG-CCgCGCCGAa -3'
miRNA:   3'- aAGgUGCuUGGGUCGCuGGaGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 44448 0.74 0.360112
Target:  5'- -gCCGCGGGCCCGGCGuCCgCGUgGAg -3'
miRNA:   3'- aaGGUGCUUGGGUCGCuGGaGCGgCU- -5'
5575 5' -58.7 NC_001806.1 + 3177 0.73 0.400739
Target:  5'- --gCACGGcgGCCaCGGCGGCCUCGCUGc -3'
miRNA:   3'- aagGUGCU--UGG-GUCGCUGGAGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.