miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5577 3' -61.5 NC_001806.1 + 3786 0.67 0.624461
Target:  5'- gGCG-GCUCAugGCCACgGCggCCgCCGCg -3'
miRNA:   3'- -CGCgCGAGU--UGGUGgCGagGGgGGUG- -5'
5577 3' -61.5 NC_001806.1 + 88600 0.67 0.624461
Target:  5'- gGUGCGCUCcACCACC--UCCgCCUCGa -3'
miRNA:   3'- -CGCGCGAGuUGGUGGcgAGG-GGGGUg -5'
5577 3' -61.5 NC_001806.1 + 5907 0.67 0.624461
Target:  5'- gGC-CGC-CcGCCuuGCCGC-CCCCCCAUu -3'
miRNA:   3'- -CGcGCGaGuUGG--UGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 99953 0.67 0.615575
Target:  5'- cGCGCGCcgggagUCGACC-CCGCgcggcgcgccucgagCCuCCCCGg -3'
miRNA:   3'- -CGCGCG------AGUUGGuGGCGa--------------GG-GGGGUg -5'
5577 3' -61.5 NC_001806.1 + 152006 0.67 0.614588
Target:  5'- --cCGCUC--CCGCgGCcccgCCCCCCACg -3'
miRNA:   3'- cgcGCGAGuuGGUGgCGa---GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 296 0.67 0.614588
Target:  5'- --cCGCUC--CCGCgGCcccgCCCCCCACg -3'
miRNA:   3'- cgcGCGAGuuGGUGgCGa---GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 145427 0.67 0.614588
Target:  5'- -gGgGgUCGGCCGgugUCGCUguaaCCCCCCACg -3'
miRNA:   3'- cgCgCgAGUUGGU---GGCGA----GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 125376 0.67 0.604727
Target:  5'- --cCGCUgaCAACCACCuuccguccccuGCcCCCCCCACc -3'
miRNA:   3'- cgcGCGA--GUUGGUGG-----------CGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 109369 0.67 0.604727
Target:  5'- gGCcCGCUUGGCgC-CCGCgCCCCCCGa -3'
miRNA:   3'- -CGcGCGAGUUG-GuGGCGaGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 20631 0.67 0.604727
Target:  5'- cGgGgGUUCGACCaacggGCCGCggccacgggCCCCCgGCg -3'
miRNA:   3'- -CgCgCGAGUUGG-----UGGCGa--------GGGGGgUG- -5'
5577 3' -61.5 NC_001806.1 + 49128 0.67 0.604727
Target:  5'- gGCGCGCau--CCACC-Cg-CCCCCGCg -3'
miRNA:   3'- -CGCGCGaguuGGUGGcGagGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 80721 0.67 0.604727
Target:  5'- uCGCGCUaCAcAUCGaCGCUacCCCCCCGCc -3'
miRNA:   3'- cGCGCGA-GU-UGGUgGCGA--GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 70976 0.67 0.602757
Target:  5'- aGCGCGCcgCGGCCauccgagagguaaugGCgcaugcgcccgaggaCGC-CCCCCCGCa -3'
miRNA:   3'- -CGCGCGa-GUUGG---------------UG---------------GCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 120005 0.67 0.594886
Target:  5'- cCGCGCUCGagguGCCcCUGCgCCaCCCGCg -3'
miRNA:   3'- cGCGCGAGU----UGGuGGCGaGGgGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 26901 0.67 0.594886
Target:  5'- cCGCGCggGugCGCUuCUCgCCCCACg -3'
miRNA:   3'- cGCGCGagUugGUGGcGAGgGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 22694 0.67 0.594886
Target:  5'- gGCG-GCUgu-CCGCCGCgcccgccUCCCCCGCg -3'
miRNA:   3'- -CGCgCGAguuGGUGGCGa------GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 3172 0.67 0.594886
Target:  5'- gGCGCGCacggCGGCCACgGCggCCUCgCUGCc -3'
miRNA:   3'- -CGCGCGa---GUUGGUGgCGa-GGGG-GGUG- -5'
5577 3' -61.5 NC_001806.1 + 4197 0.67 0.585069
Target:  5'- -gGCGCcgGGCCACgGCUCCCCgCUgACg -3'
miRNA:   3'- cgCGCGagUUGGUGgCGAGGGG-GG-UG- -5'
5577 3' -61.5 NC_001806.1 + 133772 0.67 0.585069
Target:  5'- cUGCGCUCAucACCugCGCgaaaUCCUgCGCg -3'
miRNA:   3'- cGCGCGAGU--UGGugGCGa---GGGGgGUG- -5'
5577 3' -61.5 NC_001806.1 + 115623 0.67 0.585069
Target:  5'- cUGCGCcagCGACC-CCGCcCUCCuCCGCa -3'
miRNA:   3'- cGCGCGa--GUUGGuGGCGaGGGG-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.