Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5577 | 3' | -61.5 | NC_001806.1 | + | 51819 | 0.66 | 0.663936 |
Target: 5'- cGUG-GC-CGGCCugCGCgacgCCCUCCAUc -3' miRNA: 3'- -CGCgCGaGUUGGugGCGa---GGGGGGUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 108779 | 0.66 | 0.663936 |
Target: 5'- aGCGUGCugUCGGCCugcacgUCGCUUCCCaCCGg -3' miRNA: 3'- -CGCGCG--AGUUGGu-----GGCGAGGGG-GGUg -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 97494 | 0.66 | 0.663936 |
Target: 5'- uGCuGCGCUCcgaguACgGCgGCUCCUUCCGa -3' miRNA: 3'- -CG-CGCGAGu----UGgUGgCGAGGGGGGUg -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 125720 | 0.66 | 0.663936 |
Target: 5'- cCGCGCcccUCuGGCCAUCGgUCCCCUCu- -3' miRNA: 3'- cGCGCG---AG-UUGGUGGCgAGGGGGGug -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 148816 | 0.66 | 0.663936 |
Target: 5'- gGgGgGCUCccCCccgagACCGC-CCCCCCAUc -3' miRNA: 3'- -CgCgCGAGuuGG-----UGGCGaGGGGGGUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 52645 | 0.66 | 0.654084 |
Target: 5'- gGCGCGacaaCGAgcccCCGCCcCUCCCCCgACc -3' miRNA: 3'- -CGCGCga--GUU----GGUGGcGAGGGGGgUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 23722 | 0.66 | 0.654084 |
Target: 5'- gGUGCGC-CGGgC-CCGC-CCCCgCCGCc -3' miRNA: 3'- -CGCGCGaGUUgGuGGCGaGGGG-GGUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 82993 | 0.66 | 0.652112 |
Target: 5'- cGCGUGCgccccucccgccCAGCCAUgGCaacuucgCCCCCCGg -3' miRNA: 3'- -CGCGCGa-----------GUUGGUGgCGa------GGGGGGUg -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 37671 | 0.66 | 0.648165 |
Target: 5'- uGUGCGCUgCGGCCAaaGCUCUcgcugaugcggucgaCCgCCGCg -3' miRNA: 3'- -CGCGCGA-GUUGGUggCGAGG---------------GG-GGUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 101072 | 0.66 | 0.644216 |
Target: 5'- aCGCGCUcCAGCUGCaCGCaggcgaUCagCCCCACa -3' miRNA: 3'- cGCGCGA-GUUGGUG-GCG------AGg-GGGGUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 24907 | 0.66 | 0.644216 |
Target: 5'- gGCGgGCUUGGCCA-CGC-CCCCgCgGCg -3' miRNA: 3'- -CGCgCGAGUUGGUgGCGaGGGG-GgUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 52756 | 0.66 | 0.644216 |
Target: 5'- aUGCGaaCGACCcggucGCCGagCCCCCCGCu -3' miRNA: 3'- cGCGCgaGUUGG-----UGGCgaGGGGGGUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 131694 | 0.66 | 0.641254 |
Target: 5'- -aGCGC-CAuuACCcuuuacgcgguaugGCUGC-CCCCCCGCg -3' miRNA: 3'- cgCGCGaGU--UGG--------------UGGCGaGGGGGGUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 132067 | 0.66 | 0.63434 |
Target: 5'- aGCGuCGUggGGCCcgcCCGCcgCCCCUCGCg -3' miRNA: 3'- -CGC-GCGagUUGGu--GGCGa-GGGGGGUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 77567 | 0.66 | 0.63434 |
Target: 5'- aGUaCGCUgGAUCgGCCGUUCgCCCCCAg -3' miRNA: 3'- -CGcGCGAgUUGG-UGGCGAG-GGGGGUg -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 152037 | 0.66 | 0.63434 |
Target: 5'- cGCGCGCgc-GCaCGCCGCccggaccgCCgCCCGCc -3' miRNA: 3'- -CGCGCGaguUG-GUGGCGa-------GGgGGGUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 327 | 0.66 | 0.63434 |
Target: 5'- cGCGCGCgc-GCaCGCCGCccggaccgCCgCCCGCc -3' miRNA: 3'- -CGCGCGaguUG-GUGGCGa-------GGgGGGUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 148737 | 0.66 | 0.63434 |
Target: 5'- -gGCGCaCAcgucGCCcucgUCGCUCCCCCCGu -3' miRNA: 3'- cgCGCGaGU----UGGu---GGCGAGGGGGGUg -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 26745 | 0.66 | 0.633352 |
Target: 5'- cGCGCcccuuccGC-CuuCCGCCGCgccucgCCCUCCGCc -3' miRNA: 3'- -CGCG-------CGaGuuGGUGGCGa-----GGGGGGUG- -5' |
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5577 | 3' | -61.5 | NC_001806.1 | + | 132678 | 0.67 | 0.628412 |
Target: 5'- cCGCGCUCcugggGGCCuggcccgcgguggggGCCagggucgucCUCCCCCCGCg -3' miRNA: 3'- cGCGCGAG-----UUGG---------------UGGc--------GAGGGGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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